Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004729

Physical Location & Seq

Genomic Coordinates Forward (+)

21083509 .. 21087593

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G207100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTGTTAGCTCTCTCTGCAATGCAGGCGCTAGGTTCTCGGGGGAAGAAGGGATAGATGTAAGAAACATGACAGAACACAAAAGAAGCCCCTGCTCTGTTGATCAAAGCAATTTTACTTCTCTTGCATCCAAACGACATAAGACTGATTTGTCCATCTCCACAAAGGAGAGGAAAGAGAAGCTTGGTGAACGGATTGTAGCTTTGCAACAGCTTGTTTCGCCATATGGAAAGACAGACACAGCTTCAGTCCTGCTGGAGGCAATGGATTACATTCGCTTCCTTCATGAACAAGTTAAGGTGTTGAGCGCTCCATACCTTGAAAGCACACCAACAGCTAAGATGCAGGAATTAGAGCCATACAGCTTGAGAAGCAGAGGTCTGTGCCTTGTTCCTGTCTCTTGTACTGCCGGAGTTGCTCAAAGTAATGGTGCAGATATCTGGGCCCCCATTAAGAATACTTCCCCCAAGTTTGAGGACGCCATCTCACAATTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.32

Weight (kDa)

7.68

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710
fragaria_vesca	FvH4_4g10460 FvH4_4g10460 FvH4_4g10460
malus_domestica	MD04G1049000.v1.1
prunus_persica	Prupe.1G207100_v2.0.a1 Prupe.1G207100_v2.0.a1
pyrus_communis	pycom04g04320
rosa_chinensis	RchiOBHm_Chr4g0405961
rosa_laevigata	RLG00000008802
rosa_multiflora	Rmu_sc0005593.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350690
rosa_rugosa	Rorug04G0064500
rosa_samantha	Rh4AG135100 Rh4BG132100 Rh4CG142800 Rh4DG130000
rosa_wichuraiana	Rw4G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	406
AfeI	AGCGCT	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	323
AluBI	AGCT	7 cut(s)	12, 184, 203, 214, 245, 338, 366
AluI	AGCT	7 cut(s)	12, 184, 203, 214, 245, 338, 366
Alw26I	GTCTC	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	40
Aor51HI	AGCGCT	1 cut(s)	310
AoxI	GGCC	1 cut(s)	444
ApaI	GGGCCC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	32, 311
AspS9I	GGNCC	2 cut(s)	444, 445
AsuHPI	GGTGA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	448
BccI	CCATC	2 cut(s)	164, 491
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	2 cut(s)	33, 312
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	444, 445
BmiI	GGNNCC	2 cut(s)	446, 447
BmsI	GCATC	2 cut(s)	137, 333
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse3DI	GCAATG	2 cut(s)	28, 270
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	2 cut(s)	28, 270
BseSI	GKGCMC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	40
Bsp120I	GGGCCC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	446, 447
BsrDI	GCAATG	2 cut(s)	28, 270
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	339
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	128
BstH2I	RGCGCY	2 cut(s)	33, 312
BstHHI	GCGC	2 cut(s)	32, 311
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 27, 220, 372, 416
BstSLI	GKGCMC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	2 cut(s)	32, 311
Cfr13I	GGNCC	2 cut(s)	444, 445
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	2 cut(s)	70, 287
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	439
Eco47III	AGCGCT	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	2 cut(s)	73, 290
FaiI	YATR	7 cut(s)	71, 141, 226, 228, 288, 316, 361
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	2 cut(s)	69, 286
FauNDI	CATATG	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	103
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	448
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	31, 310
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	2 cut(s)	33, 312
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	1 cut(s)	411
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	32, 311
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	73, 290
Hin6I	GCGC	2 cut(s)	30, 309
HinP1I	GCGC	2 cut(s)	30, 309
HindIII	AAGCTT	1 cut(s)	182
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	44, 293
HpyCH4V	TGCA	6 cut(s)	21, 26, 128, 208, 346, 434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 27, 220, 372, 416
HpyF3I	CTNAG	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	2 cut(s)	73, 290
HspAI	GCGC	2 cut(s)	30, 309
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	12, 106, 242, 266, 332, 408, 424, 427
LweI	GCATC	2 cut(s)	137, 333
MaeI	CTAG	1 cut(s)	33
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	3 cut(s)	112, 350, 491
MnlI	CCTC	4 cut(s)	165, 253, 371, 469
MseI	TTAA	2 cut(s)	297, 453
MspI	CCGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	5 cut(s)	18, 27, 220, 372, 416
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	73, 290
NlaIV	GGNNCC	2 cut(s)	446, 447
PagI	TCATGA	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	446, 447
PspOMI	GGGCCC	1 cut(s)	444
PspPI	GGNCC	2 cut(s)	444, 445
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	297, 453
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	2 cut(s)	444, 445
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	2 cut(s)	137, 333
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	3 cut(s)	112, 350, 491
SspMI	CTAG	1 cut(s)	33
TasI	AATT	3 cut(s)	112, 350, 491
TatI	WGTACW	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	297, 453
Tru9I	TTAA	2 cut(s)	297, 453
TspDTI	ATGAA	2 cut(s)	275, 303
TspGWI	ACGGA	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.