pycom04g04320

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0004729
Physical Location & Seq
Forward (+)
3877978 .. 3881938
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g04320.5

Sequence Viewer

Length: 501 bp
ATGATCGTTAGCTCCTTCTGCAATGCAGGCGCCACGTTCTCGGGAGAAGAAGGGATAGATGTAAGAAAGATGACAGAACAGAAACGAAGCCCCTGCGCCGTTGACCAAAGCAGTATTACTTCTCTTCCATCTAAACGACATAAGACTGATTTATCCTTCTCCACAAAGGAGAGGAAAGAGAAGCTTGGTGAACGGATTGTAGCTCTGCAACAGCTTGTTTCACCATTTGGAAAGACAGATACAGCTTCTGTCCTTCTGGAGGCAATGGAGTACATACGCTTTCTTCATGAACAAGTTAAGGTGTTGAGCGCTCCATACCTCCAAAGCACACCGACAGCTAACACTCAGGAACTAAAGCCATACAGCTTGAGAAGCAGAGGTCTTTCTCTTGTTCCTGTCTCCTCTACCATTGGCATTGCTCAAAGTAATGGCGCAGATATCTGGGCGCCCATTAAGACGACTTCCCCCAAGTTTGAGAACGACATCTCACATTTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.3

Weight (kDa)

8.91

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 29, 445
AcyI GRCGYC 2 cut(s) 30, 446
AfaI GTAC 1 cut(s) 272
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 259
AluBI AGCT 7 cut(s) 12, 184, 203, 214, 245, 338, 366
AluI AGCT 7 cut(s) 12, 184, 203, 214, 245, 338, 366
Alw26I GTCTC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 310
AspLEI GCGC 5 cut(s) 32, 98, 311, 434, 448
AsuHPI GGTGA 2 cut(s) 200, 213
AvaI CYCGRG 1 cut(s) 40
BanI GGYRCC 2 cut(s) 29, 445
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BcoDI GTCTC 1 cut(s) 403
BfoI RGCGCY 3 cut(s) 33, 312, 449
BmeT110I CYCGRG 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 31, 447
BpmI CTGGAG 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 388
BsaHI GRCGYC 2 cut(s) 30, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 3 cut(s) 28, 270, 414
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 3 cut(s) 28, 270, 414
BseMII CTCAG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 391
BshNI GGYRCC 2 cut(s) 29, 445
BsiHKCI CYCGRG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 403
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 31, 447
BspT107I GGYRCC 2 cut(s) 29, 445
BsrDI GCAATG 3 cut(s) 28, 270, 414
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 2 cut(s) 30, 446
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 2 cut(s) 30, 446
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 257
BstH2I RGCGCY 3 cut(s) 33, 312, 449
BstHHI GCGC 5 cut(s) 32, 98, 311, 434, 448
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 18, 27, 372
Cac8I GCNNGC 1 cut(s) 28
CaiI CAGNNNCTG 1 cut(s) 248
CciI TCATGA 1 cut(s) 286
CfoI GCGC 5 cut(s) 32, 98, 311, 434, 448
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 287
CviJI RGCY 9 cut(s) 12, 90, 184, 203, 214, 245, 338, 358, 366
CviKI_1 RGCY 9 cut(s) 12, 90, 184, 203, 214, 245, 338, 358, 366
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 345
DinI GGCGCC 2 cut(s) 31, 447
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 439
Eco47III AGCGCT 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRV GATATC 1 cut(s) 439
EgeI GGCGCC 2 cut(s) 31, 447
EheI GGCGCC 2 cut(s) 31, 447
FaeI CATG 1 cut(s) 290
FaiI YATR 5 cut(s) 141, 275, 288, 316, 361
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 1 cut(s) 286
GlaI GCGC 5 cut(s) 31, 97, 310, 433, 447
GsuI CTGGAG 1 cut(s) 278
HaeII RGCGCY 3 cut(s) 33, 312, 449
HhaI GCGC 5 cut(s) 32, 98, 311, 434, 448
Hin1I GRCGYC 2 cut(s) 30, 446
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 5 cut(s) 30, 96, 309, 432, 446
HinP1I GCGC 5 cut(s) 30, 96, 309, 432, 446
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 182
HphI GGTGA 2 cut(s) 200, 213
Hpy166II GTNNAC 2 cut(s) 103, 191
Hpy188III TCNNGA 4 cut(s) 42, 257, 287, 347
Hpy8I GTNNAC 2 cut(s) 103, 191
HpyAV CCTTC 4 cut(s) 25, 44, 166, 263
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 3 cut(s) 21, 26, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 27, 372
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 2 cut(s) 30, 446
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 5 cut(s) 30, 96, 309, 432, 446
KasI GGCGCC 2 cut(s) 29, 445
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 17, 316
LpnPI CCDG 6 cut(s) 12, 106, 242, 332, 408, 427
MaeII ACGT 1 cut(s) 35
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 59, 116, 275
Mly113I GGCGCC 2 cut(s) 30, 446
MnlI CCTC 5 cut(s) 165, 253, 329, 371, 412
MseI TTAA 2 cut(s) 297, 453
MwoI GCNNNNNNNGC 3 cut(s) 18, 27, 372
NarI GGCGCC 2 cut(s) 30, 446
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 2 cut(s) 31, 447
PagI TCATGA 1 cut(s) 286
PluTI GGCGCC 2 cut(s) 33, 449
PspN4I GGNNCC 2 cut(s) 31, 447
PstNI CAGNNNCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 297, 453
Sau3AI GATC 1 cut(s) 3
SfoI GGCGCC 2 cut(s) 31, 447
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SspDI GGCGCC 2 cut(s) 29, 445
TaiI ACGT 1 cut(s) 38
TatI WGTACW 1 cut(s) 270
Tru1I TTAA 2 cut(s) 297, 453
Tru9I TTAA 2 cut(s) 297, 453
TspDTI ATGAA 2 cut(s) 275, 303
TspGWI ACGGA 1 cut(s) 208
XagI CCTNNNNNAGG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.