Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004729

Physical Location & Seq

Genomic Coordinates Reverse (-)

14152799 .. 14157087

Gene Structure 4289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10460.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTGTCAGCTCTCTGTGCAATGCAAGCGCCAGGTTCTCAGGAGAAGAAGGGATTGATGTAAGAAAGATGACAGAACACAAAAGAAACCCCTGCTCTGTTGAGCAAAGCAGTCGCACTGCTCTTACATCTAAGCGACATAAGACTGATTTATCCATGTCAACAAAGGAGAGAAAAGAGAAGCTTGGTGAACGAATTGTGGCTCTACAGCAGCTTGTTTCTCCATACGGAAAGACAGATACAGCTTCTGTCTTGCTGGAGGCAATGGATTATATCCGCTTCCTTCATGAACAAGTCAAGGTGTTAAGCGCTCCATACCTCCAAAGCACGCCAACAGCTAAGATGCAGGAATTACAGTCATTCAGCTTGAGAAGCAGAGGTCTCTGTCTCGTTCCAATTGATTGCACAGTTGGAGTTGCTCAAAGTAATGGTGCAGACATCTGGGCTCCCATAAAGACTACTTCCGCCAAGTTTGAGAACGTGAACTCAAATTCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.4

Weight (kDa)

9.1

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710 AT1G05710
fragaria_vesca	FvH4_4g10460 FvH4_4g10460 FvH4_4g10460
malus_domestica	MD04G1049000.v1.1
prunus_persica	Prupe.1G207100_v2.0.a1 Prupe.1G207100_v2.0.a1
pyrus_communis	pycom04g04320
rosa_chinensis	RchiOBHm_Chr4g0405961
rosa_laevigata	RLG00000008802
rosa_multiflora	Rmu_sc0005593.1_g000006
rosa_roxburghii	Rroxscaffold_5G00350690
rosa_rugosa	Rorug04G0064500
rosa_samantha	Rh4AG135100 Rh4BG132100 Rh4CG142800 Rh4DG130000
rosa_wichuraiana	Rw4G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	277, 465
AcsI	RAATTY	1 cut(s)	490
AfeI	AGCGCT	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	32
AloI	GAACNNNNNNTCC	1 cut(s)	476
AluBI	AGCT	6 cut(s)	12, 184, 214, 245, 338, 366
AluI	AGCT	6 cut(s)	12, 184, 214, 245, 338, 366
Alw26I	GTCTC	2 cut(s)	386, 392
AlwNI	CAGNNNCTG	1 cut(s)	248
Aor51HI	AGCGCT	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	490
AspLEI	GCGC	2 cut(s)	32, 311
AsuHPI	GGTGA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	386, 392
BfmI	CTRYAG	1 cut(s)	206
BfoI	RGCGCY	2 cut(s)	33, 312
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	386
Bse3DI	GCAATG	2 cut(s)	28, 270
BseBI	CCWGG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	28, 270
BseMII	CTCAG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	453
BsmAI	GTCTC	2 cut(s)	386, 392
Bso31I	GGTCTC	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	448
BspACI	CCGC	2 cut(s)	277, 465
BspCNI	CTCAG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	2 cut(s)	28, 270
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	357, 409
BstC8I	GCNNGC	2 cut(s)	28, 329
BstDEI	CTNAG	3 cut(s)	40, 132, 339
BstH2I	RGCGCY	2 cut(s)	33, 312
BstHHI	GCGC	2 cut(s)	32, 311
BstMAI	GTCTC	2 cut(s)	386, 392
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 27, 372
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	28, 329
CaiI	CAGNNNCTG	1 cut(s)	248
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	2 cut(s)	32, 311
CviAII	CATG	2 cut(s)	157, 287
CviJI	RGCY	8 cut(s)	12, 184, 203, 214, 245, 338, 366, 446
CviKI_1	RGCY	8 cut(s)	12, 184, 203, 214, 245, 338, 366, 446
DdeI	CTNAG	3 cut(s)	40, 132, 339
EciI	GGCGGA	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	1 cut(s)	386
Eco47III	AGCGCT	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	2 cut(s)	160, 290
FaiI	YATR	7 cut(s)	141, 158, 226, 273, 288, 316, 452
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	2 cut(s)	156, 286
Fnu4HI	GCNGC	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	1 cut(s)	212
GlaI	GCGC	2 cut(s)	31, 310
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	2 cut(s)	33, 312
HhaI	GCGC	2 cut(s)	32, 311
Hin1II	CATG	2 cut(s)	160, 290
Hin6I	GCGC	2 cut(s)	30, 309
HinP1I	GCGC	2 cut(s)	30, 309
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	182
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	3 cut(s)	162, 191, 484
Hpy188III	TCNNGA	2 cut(s)	42, 287
Hpy8I	GTNNAC	3 cut(s)	162, 191, 484
HpyAV	CCTTC	2 cut(s)	44, 293
HpyCH4III	ACNGT	2 cut(s)	357, 409
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	5 cut(s)	21, 26, 346, 405, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 27, 372
HpyF3I	CTNAG	3 cut(s)	40, 132, 339
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	2 cut(s)	160, 290
HspAI	GCGC	2 cut(s)	30, 309
LmnI	GCTCC	2 cut(s)	316, 451
LpnPI	CCDG	7 cut(s)	19, 27, 46, 106, 242, 332, 427
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	1 cut(s)	480
MboII	GAAGA	1 cut(s)	59
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	4 cut(s)	195, 350, 396, 490
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	3 cut(s)	253, 329, 371
MseI	TTAA	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	18, 27, 372
NlaIII	CATG	2 cut(s)	160, 290
NlaIV	GGNNCC	1 cut(s)	447
PagI	TCATGA	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	4 cut(s)	195, 350, 396, 490
SsiI	CCGC	2 cut(s)	277, 465
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	357, 409
TaiI	ACGT	1 cut(s)	483
TasI	AATT	4 cut(s)	195, 350, 396, 490
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	275, 303
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.