RLG00000008802

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004729
Physical Location & Seq
Forward (+)
39627994 .. 39632489
4496 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008802

Sequence Viewer

Length: 501 bp
ATGATTGCTAGCTCTCTCTGCAATGCAACCTCCAGGTTCTCGGGAGAAGAAGGGATTGATGTAAGAAAGATGACAGAACACAAAAGAAGCCCCTGCTCTGTTGACCAAAGCAGTGTTACTGCTCTTGCATCTAAGCGACATAAGACTGATTTATCCATGTCAACAAAGGAGAGAAAAGAGAAGTTTGGTGAACGAATTGTGGCTCTACAACAGCTTGTTTCTCCATATGGAAAGACAGATACAGCTTCTGTCTTACTGGAGGCAATGGATTATATACGCTTCCTTCATGAACAAGTCAAGGTGTTGAGTGCTCCATACCTCCAAAGCACGCCAACAGCTAAGATGCAGGAATTACATCCATACAGCTTGAGAAGCAGAGGTCTTTGCCTTGTTCCGGTCGATTGCACAGTTGGAGTTGCTCAAAGTAATGGTGCAGATATCTGGGCTCCCATTAAGACTACTTCCCCCAAATTTGAGAATGTGACCTCAAATTTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.38

Weight (kDa)

8.91

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 470, 490
AfiI CCNNNNNNNGG 1 cut(s) 394
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 5 cut(s) 12, 214, 245, 338, 366
AluI AGCT 5 cut(s) 12, 214, 245, 338, 366
Alw21I GWGCWC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 40
ApoI RAATTY 2 cut(s) 470, 490
AsuHPI GGTGA 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 40
BanII GRGCYC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 34
BfaI CTAG 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 137, 333
BmtI GCTAGC 1 cut(s) 12
BpmI CTGGAG 2 cut(s) 16, 278
BpuEI CTTGAG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 2 cut(s) 28, 270
BseBI CCWGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 355
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 2 cut(s) 28, 270
BseNI ACTGG 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 453
Bsh1285I CGRYCG 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 313, 448
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 447
BspOI GCTAGC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 28, 270
BsrI ACTGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 10, 329
BstDEI CTNAG 2 cut(s) 132, 339
BstF5I GGATG 1 cut(s) 355
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 2 cut(s) 18, 372
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 10, 329
CaiI CAGNNNCTG 1 cut(s) 248
CciI TCATGA 1 cut(s) 286
CviAII CATG 2 cut(s) 157, 287
CviJI RGCY 8 cut(s) 12, 90, 203, 214, 245, 338, 366, 446
CviKI_1 RGCY 8 cut(s) 12, 90, 203, 214, 245, 338, 366, 446
DdeI CTNAG 2 cut(s) 132, 339
Eco24I GRGCYC 1 cut(s) 448
Eco32I GATATC 1 cut(s) 439
Eco88I CYCGRG 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 32
EcoRV GATATC 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 448
FaeI CATG 2 cut(s) 160, 290
FaiI YATR 9 cut(s) 141, 158, 226, 228, 273, 275, 288, 316, 361
FatI CATG 2 cut(s) 156, 286
FauNDI CATATG 1 cut(s) 226
FokI GGATG 1 cut(s) 342
FriOI GRGCYC 1 cut(s) 448
FspBI CTAG 1 cut(s) 9
GsuI CTGGAG 2 cut(s) 16, 278
HapII CCGG 1 cut(s) 395
Hin1II CATG 2 cut(s) 160, 290
HincII GTYRAC 2 cut(s) 103, 162
HindII GTYRAC 2 cut(s) 103, 162
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 103, 162, 191
Hpy188III TCNNGA 2 cut(s) 42, 287
Hpy8I GTNNAC 3 cut(s) 103, 162, 191
HpyAV CCTTC 2 cut(s) 44, 293
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 6 cut(s) 21, 26, 128, 346, 405, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 372
HpyF3I CTNAG 2 cut(s) 132, 339
Hsp92II CATG 2 cut(s) 160, 290
LmnI GCTCC 2 cut(s) 316, 451
LpnPI CCDG 7 cut(s) 19, 46, 106, 242, 332, 408, 427
LweI GCATC 2 cut(s) 137, 333
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 115, 481
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 313, 448
MluCI AATT 4 cut(s) 195, 350, 470, 490
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 5 cut(s) 40, 253, 329, 371, 496
MseI TTAA 1 cut(s) 453
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 18, 372
NdeI CATATG 1 cut(s) 226
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 160, 290
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 481
PagI TCATGA 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 248
SaqAI TTAA 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 2 cut(s) 313, 448
SfaNI GCATC 2 cut(s) 137, 333
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 4 cut(s) 195, 350, 470, 490
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 399
TasI AATT 4 cut(s) 195, 350, 470, 490
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 2 cut(s) 275, 303
TspRI CASTG 1 cut(s) 118
XapI RAATTY 2 cut(s) 470, 490
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.