Rh4DG130000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0004729
Physical Location & Seq
Reverse (-)
21561452 .. 21565194
3743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG130000.1

Sequence Viewer

Length: 435 bp
ATGATTGCTAGCTCTCTCTGCAATGCAACCCCCAGGTTCTCGGGAGAAGAAGGGATTGATGTAAGAAAGATGACAGAACACAAAAGAAGCCCCTGCTCTGTTGACCAAAGCAGTGTTACTGCTCTTGCATCTAAGCGACATAAGACTGATTTATCCATGTCAACAAAGACAGATACAGCTTCTGTCTTACTGGAGGCAATGGATTATATACGCTTCCTTCATGAACAAGTCAAGGTGTTGAGCGCTCCATACCTCCAAAGCACGCCAACAGCTAAGATGCAGGAATTACATCCATACAGCTTGAGAAGCAGAGGTCTTTGCCTTGTTCCGGTCGATTGCACAGTTGGAGTTGCTCAAAGTAATGGTGCAGATATCTGGGCTCCCATTAAGACTACTTCCCCCAAATTTGAGAATGTGACCTCAAATTTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

8.38

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 404, 424
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 328
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 4 cut(s) 12, 179, 272, 300
AluI AGCT 4 cut(s) 12, 179, 272, 300
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 40
Aor51HI AGCGCT 1 cut(s) 244
ApoI RAATTY 2 cut(s) 404, 424
AspLEI GCGC 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 40
BanII GRGCYC 1 cut(s) 382
BciT130I CCWGG 1 cut(s) 34
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 137, 267
BmtI GCTAGC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 28, 204
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 28, 204
BseNI ACTGG 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 382
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 381
BspOI GCTAGC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 28, 204
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 10, 263
BstDEI CTNAG 2 cut(s) 132, 273
BstF5I GGATG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 2 cut(s) 18, 306
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 10, 263
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 245
CviAII CATG 2 cut(s) 157, 221
CviJI RGCY 6 cut(s) 12, 90, 179, 272, 300, 380
CviKI_1 RGCY 6 cut(s) 12, 90, 179, 272, 300, 380
DdeI CTNAG 2 cut(s) 132, 273
Eco24I GRGCYC 1 cut(s) 382
Eco32I GATATC 1 cut(s) 373
Eco47III AGCGCT 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 32
EcoRV GATATC 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 382
FaeI CATG 2 cut(s) 160, 224
FaiI YATR 7 cut(s) 141, 158, 207, 209, 222, 250, 295
FatI CATG 2 cut(s) 156, 220
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 382
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 246
HapII CCGG 1 cut(s) 329
HhaI GCGC 1 cut(s) 245
Hin1II CATG 2 cut(s) 160, 224
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 2 cut(s) 103, 162
HindII GTYRAC 2 cut(s) 103, 162
HpaII CCGG 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 103, 162
Hpy188III TCNNGA 2 cut(s) 42, 221
Hpy8I GTNNAC 2 cut(s) 103, 162
HpyAV CCTTC 2 cut(s) 44, 227
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 6 cut(s) 21, 26, 128, 280, 339, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 306
HpyF3I CTNAG 2 cut(s) 132, 273
Hsp92II CATG 2 cut(s) 160, 224
HspAI GCGC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 250, 385
LpnPI CCDG 7 cut(s) 19, 46, 106, 176, 266, 342, 361
LweI GCATC 2 cut(s) 137, 267
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 115, 415
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 3 cut(s) 284, 404, 424
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 4 cut(s) 187, 263, 305, 430
MseI TTAA 1 cut(s) 387
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 18, 306
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 160, 224
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 415
PagI TCATGA 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 382
SetI ASST 9 cut(s) 14, 38, 181, 237, 255, 274, 302, 316, 422
SfaNI GCATC 2 cut(s) 137, 267
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 3 cut(s) 284, 404, 424
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 333
TasI AATT 3 cut(s) 284, 404, 424
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 209, 237
TspRI CASTG 1 cut(s) 118
XapI RAATTY 2 cut(s) 404, 424
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.