AT1G05835

protein domain specific binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016213
Physical Location & Seq
Forward (+)
1762145 .. 1762814
670 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05835.1

Sequence Viewer

Length: 384 bp
ATGTCAAAACCTCTCAAGTTCCTTCTTTGGTCATCTCTTGCTCTCTTGCTTCTTCAAATAGGTTCTGGGGCAATATGTGAGGGCAAAAGCAGCGAACCGGCGGTGAGGCAGACGCAGGTGAAGTGGAGAGAAGGAAAGAAGTTCAGAGTCGAGGTAATGAACAAATGTCCCATGTGTCCAATCATCAACCTTCGTCTGAAATGTCAAGGATTTCCTCAGTCGCTTGTGGACCCCACATTCCTCCGTGTTCTCTCCTCTTCCGCCGGAAACTGTGTGGTTAACGATGGCTTGCCACTGAGTCCAATGCAGACTCTCTCCTTCAACTACTCCAACACACACCAGTTTGCTCTGCGACCTCTTTCTTGGTCTTTTCAGTGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.22

Weight (kDa)

9.38

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 37 - 122 5.6e-19 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05835
fragaria_vesca FvH4_4g12240
malus_domestica MD04G1028300.v1.1
prunus_persica Prupe.1G177700_v2.0.a1 Prupe.1G177700_v2.0.a1
pyrus_communis pycom04g02490
rosa_chinensis RchiOBHm_Chr4g0409991
rosa_laevigata RLG00000008507
rosa_multiflora Rmu_sc0000365.1_g000085
rosa_roxburghii Rroxscaffold_5G00354510
rosa_rugosa Rorug04G0100600
rosa_samantha Rh4AG158900 Rh4CG169900 Rh4DG153900
rosa_wichuraiana Rw4G013130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 2 cut(s) 101, 261
AgsI TTSAA 2 cut(s) 56, 322
ApeKI GCWGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 115, 130
AvaII GGWCC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 230, 287
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 98, 264
BslFI GGGAC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 153
BspACI CCGC 2 cut(s) 101, 261
BspCNI CTCAG 2 cut(s) 229, 288
BspLI GGNNCC 1 cut(s) 231
BspMI ACCTGC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 216, 296
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 293, 380
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 1 cut(s) 121
CviAII CATG 1 cut(s) 172
CviJI RGCY 1 cut(s) 288
CviKI_1 RGCY 1 cut(s) 288
DdeI CTNAG 2 cut(s) 216, 296
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
EciI GGCGGA 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 229
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 76, 173
FaqI GGGAC 1 cut(s) 153
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HapII CCGG 2 cut(s) 98, 264
HgaI GACGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 3 cut(s) 147, 298, 310
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 2 cut(s) 98, 264
HphI GGTGA 2 cut(s) 115, 130
Hpy166II GTNNAC 2 cut(s) 229, 280
Hpy188I TCNGA 2 cut(s) 146, 198
Hpy8I GTNNAC 2 cut(s) 229, 280
HpyAV CCTTC 4 cut(s) 32, 125, 200, 328
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 216, 296
Hsp92II CATG 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 51, 101, 111, 277, 353
Lsp1109I GCAGC 1 cut(s) 102
MboII GAAGA 2 cut(s) 44, 249
MlyI GAGTC 3 cut(s) 156, 304, 307
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 8 cut(s) 21, 73, 99, 145, 225, 251, 265, 366
MseI TTAA 1 cut(s) 279
MspI CCGG 2 cut(s) 98, 264
MwoI GCNNNNNNNGC 1 cut(s) 90
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 231
PaqCI CACCTGC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 3 cut(s) 155, 304, 306
PpsI GAGTC 3 cut(s) 155, 304, 306
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 3 cut(s) 156, 304, 307
SetI ASST 6 cut(s) 13, 64, 120, 156, 192, 358
SinI GGWCC 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SsiI CCGC 2 cut(s) 101, 261
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 150
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 2 cut(s) 300, 380
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 300, 380
VpaK11BI GGWCC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.