FvH4_4g12240

histone-lysine N-methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016213
Physical Location & Seq
Forward (+)
15932135 .. 15933021
887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12240.t1

Sequence Viewer

Length: 384 bp
ATGCAAGGCCAAACAGCTTACAAGCTTCTTATCTGGACGTCTCTTACTTCTGCATCTCTTCTCTGCCATGGATGGGGAGAAAAATGTACTACAAATGATCATGCTCCAACAGTGCAGCAGTCTCAAGTAGGTTTTGGAAGCTCTCCAACATTCATGGTAGAAGTGCAAAACAACTGCCCAATGTGCCCAGTTATCAACCTTCATTTGAAGTGCGGAAGCTTTCCTCAAGCTCTGGTCGACCCCAGGCTACTCAAAGTTCTAAGCAACAACGACTGTGTAGTTAATAGTGGTTTACCATTGGCACCTTTGCAAAAGATTTCCTTCAACTATTCTCACCAAATGTATCTAATGTCTCCTAAAATCTGGTATTTCCAGTGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.17

Weight (kDa)

7.59

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 38 - 115 1.8e-19 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05835
fragaria_vesca FvH4_4g12240
malus_domestica MD04G1028300.v1.1
prunus_persica Prupe.1G177700_v2.0.a1 Prupe.1G177700_v2.0.a1
pyrus_communis pycom04g02490
rosa_chinensis RchiOBHm_Chr4g0409991
rosa_laevigata RLG00000008507
rosa_multiflora Rmu_sc0000365.1_g000085
rosa_roxburghii Rroxscaffold_5G00354510
rosa_rugosa Rorug04G0100600
rosa_samantha Rh4AG158900 Rh4CG169900 Rh4DG153900
rosa_wichuraiana Rw4G013130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 237
AciI CCGC 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 208, 325
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 5 cut(s) 17, 25, 141, 219, 230
AluI AGCT 5 cut(s) 17, 25, 141, 219, 230
Alw26I GTCTC 3 cut(s) 45, 126, 357
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 244
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 3 cut(s) 45, 126, 357
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 108, 210
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 67, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 188, 373
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 67, 242
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 2 cut(s) 188, 373
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 3 cut(s) 45, 126, 357
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 188, 373
BssECI CCNNGG 2 cut(s) 67, 242
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 112, 275
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 3 cut(s) 45, 126, 357
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 117, 380
Csp6I GTAC 1 cut(s) 87
CviAII CATG 3 cut(s) 68, 101, 154
CviJI RGCY 7 cut(s) 9, 17, 25, 141, 219, 230, 247
CviKI_1 RGCY 7 cut(s) 9, 17, 25, 141, 219, 230, 247
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 260
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 71, 104, 157
FaiI YATR 3 cut(s) 69, 102, 155
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 3 cut(s) 67, 100, 153
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 9
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 71, 104, 157
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 23, 217
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 238, 293
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 238, 293
HpyAV CCTTC 2 cut(s) 209, 331
HpyCH4III ACNGT 2 cut(s) 112, 275
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 4, 53, 115, 166, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 71, 104, 157
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 19, 201, 218, 229, 256, 349
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 62
MaeII ACGT 1 cut(s) 38
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 131, 170
MnlI CCTC 1 cut(s) 234
MseI TTAA 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 183
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 71, 104, 157
NlaIV GGNNCC 1 cut(s) 303
PkrI GCNGC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 303
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 19, 27, 41, 133, 143, 201, 221, 232, 307
SfaNI GCATC 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 123, 225
SmoI CTYRAG 2 cut(s) 123, 225
SsiI CCGC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 112, 275
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 237
TatI WGTACW 1 cut(s) 86
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 117, 380
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 142, 191
TspRI CASTG 2 cut(s) 117, 380
XmiI GTMKAC 1 cut(s) 237
ZraI GACGTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.