RchiOBHm_Chr4g0409991

histone-lysine N-methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016213
Physical Location & Seq
Forward (+)
33611411 .. 33612439
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38096

Sequence Viewer

Length: 384 bp
ATGCAAGGCCAAACAGCTTTCAAGCTTCTTCTCTGGACGTTTCTTACTTTTGCATCTCTTCTCTGCCATGGATGGGAAGAAAAATGTACTACAAATGATCATGCCCCAACTGTGCAACAGTCTCAAGTAGGGTTCGGAAGATCTCCAACATTCATGGTGGAAGTGCAAAACAACTGCCCAATGTGTCCAGTTATCAACCTTCATTTGAAGTGCGGAAGCTTTCCTCAAACCCTGGTCAATCCCAGGCTACTCAAGGTTTTAAGCAACAACGACTGTGTAGTTAATAGTGGTTTACCATTGGCACCTCTGCAAAAGATTTCCTTCAATTATTCTCACCAAATGTATCTGATGTCTCCTAAAATCTGGTATTTCCAGTGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.44

Weight (kDa)

8.19

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 38 - 115 1.7e-19 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05835
fragaria_vesca FvH4_4g12240
malus_domestica MD04G1028300.v1.1
prunus_persica Prupe.1G177700_v2.0.a1 Prupe.1G177700_v2.0.a1
pyrus_communis pycom04g02490
rosa_chinensis RchiOBHm_Chr4g0409991
rosa_laevigata RLG00000008507
rosa_multiflora Rmu_sc0000365.1_g000085
rosa_roxburghii Rroxscaffold_5G00354510
rosa_rugosa Rorug04G0100600
rosa_samantha Rh4AG158900 Rh4CG169900 Rh4DG153900
rosa_wichuraiana Rw4G013130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AciI CCGC 1 cut(s) 213
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 3 cut(s) 22, 208, 325
AjnI CCWGG 2 cut(s) 231, 242
AluBI AGCT 3 cut(s) 17, 25, 219
AluI AGCT 3 cut(s) 17, 25, 219
Alw26I GTCTC 2 cut(s) 126, 357
AoxI GGCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 326
BanI GGYRCC 1 cut(s) 301
BccI CCATC 1 cut(s) 66
BciT130I CCWGG 2 cut(s) 233, 244
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 126, 357
BglII AGATCT 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 233, 244
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 233, 244
BmsI GCATC 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 108, 236
BsaJI CCNNGG 3 cut(s) 67, 231, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 188, 373
BseBI CCWGG 2 cut(s) 233, 244
BseDI CCNNGG 3 cut(s) 67, 231, 242
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 2 cut(s) 188, 373
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 126, 357
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 97, 140
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 188, 373
BssECI CCNNGG 3 cut(s) 67, 231, 242
BssMI GATC 2 cut(s) 97, 140
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 233, 244
Bst4CI ACNGT 3 cut(s) 112, 120, 275
Bst6I CTCTTC 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 77
BstKTI GATC 2 cut(s) 100, 143
BstMAI GTCTC 2 cut(s) 126, 357
BstMBI GATC 2 cut(s) 97, 140
BstNI CCWGG 2 cut(s) 233, 244
BstSCI CCNGG 2 cut(s) 231, 242
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 380
Csp6I GTAC 1 cut(s) 87
CviAII CATG 3 cut(s) 68, 101, 154
CviJI RGCY 5 cut(s) 9, 17, 25, 219, 247
CviKI_1 RGCY 5 cut(s) 9, 17, 25, 219, 247
CviQI GTAC 1 cut(s) 87
DpnI GATC 2 cut(s) 99, 142
DpnII GATC 2 cut(s) 97, 140
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 231, 242
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 71, 104, 157
FaiI YATR 3 cut(s) 69, 102, 155
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 3 cut(s) 67, 100, 153
FbaI TGATCA 1 cut(s) 97
FokI GGATG 1 cut(s) 84
HaeIII GGCC 1 cut(s) 9
Hin1II CATG 3 cut(s) 71, 104, 157
HindIII AAGCTT 2 cut(s) 23, 217
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 137, 348
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 209, 331
HpyCH4III ACNGT 3 cut(s) 112, 120, 275
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 4, 53, 115, 166, 310
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 3 cut(s) 71, 104, 157
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 97, 140
LpnPI CCDG 7 cut(s) 19, 201, 218, 229, 245, 256, 349
LweI GCATC 1 cut(s) 62
MaeII ACGT 1 cut(s) 38
MalI GATC 2 cut(s) 99, 142
MboI GATC 2 cut(s) 97, 140
MboII GAAGA 4 cut(s) 20, 50, 89, 150
MflI RGATCY 1 cut(s) 140
MluCI AATT 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 2 cut(s) 234, 315
MseI TTAA 2 cut(s) 260, 282
MspR9I CCNGG 2 cut(s) 233, 244
MvaI CCWGG 2 cut(s) 233, 244
NcoI CCATGG 1 cut(s) 67
NdeII GATC 2 cut(s) 97, 140
NlaIII CATG 3 cut(s) 71, 104, 157
NlaIV GGNNCC 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 231, 242
PspGI CCWGG 2 cut(s) 231, 242
PspN4I GGNNCC 1 cut(s) 303
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 260, 282
Sau3AI GATC 2 cut(s) 97, 140
ScrFI CCNGG 2 cut(s) 233, 244
SetI ASST 7 cut(s) 19, 27, 41, 201, 221, 258, 307
SfaNI GCATC 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 123, 251
SmoI CTYRAG 2 cut(s) 123, 251
Sse9I AATT 1 cut(s) 325
SsiI CCGC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 231, 242
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 112, 120, 275
TaiI ACGT 1 cut(s) 41
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 86
Tru1I TTAA 2 cut(s) 260, 282
Tru9I TTAA 2 cut(s) 260, 282
TscAI CASTG 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 142, 191
TspRI CASTG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.