pycom04g02490

histone-lysine N-methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016213
Physical Location & Seq
Reverse (-)
2204367 .. 2204877
511 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g02490.1

Sequence Viewer

Length: 384 bp
ATGCATTGCCAACCAGCTTTCATGCTTCTTCTCTGCACTTCTCTTACACTTGCTTCTCTTTTCCCCCACGGATGGGGAGCAAAATGCAGTACCAATGAGGAAGCTCCAACAGTGCAACAGACCCAAGTGGAGTTTGGAAGCTCTCCAAAATTCATGGTACAAGTGAATAACAAGTGCCCAATGTGCCCAATCATCAACGTCCATTTGAAGTGTGGAAGCTTTCCTCAAGCTCTGGTGAATCCCCGGCAGCTCAAGGTGCTTGCCGTCGATGATTGTGTCGTCAACGGCGGGTTGCCGTTGGCACCTCTGCAGACGTTTTCCTTCAATTACTCTCACCCAAAGTATCTCATGTATCCTAAGATTTGGTACTTTCAATGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.23

Weight (kDa)

8.13

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 39 - 113 3e-19 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05835
fragaria_vesca FvH4_4g12240
malus_domestica MD04G1028300.v1.1
prunus_persica Prupe.1G177700_v2.0.a1 Prupe.1G177700_v2.0.a1
pyrus_communis pycom04g02490
rosa_chinensis RchiOBHm_Chr4g0409991
rosa_laevigata RLG00000008507
rosa_multiflora Rmu_sc0000365.1_g000085
rosa_roxburghii Rroxscaffold_5G00354510
rosa_rugosa Rorug04G0100600
rosa_samantha Rh4AG158900 Rh4CG169900 Rh4DG153900
rosa_wichuraiana Rw4G013130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AciI CCGC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 3 cut(s) 91, 159, 368
AfiI CCNNNNNNNGG 2 cut(s) 72, 73
AgsI TTSAA 3 cut(s) 208, 325, 374
AluBI AGCT 6 cut(s) 17, 104, 141, 219, 230, 250
AluI AGCT 6 cut(s) 17, 104, 141, 219, 230, 250
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 247, 326
BaeGI GKGCMC 2 cut(s) 179, 188
BanI GGYRCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 66
BceAI ACGGC 3 cut(s) 248, 280, 301
BciVI GTATCC 1 cut(s) 363
BcnI CCSGG 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 308
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 244
BpuEI CTTGAG 2 cut(s) 210, 236
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 67, 242
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 73
Bse3DI GCAATG 1 cut(s) 4
BseDI CCNNGG 2 cut(s) 67, 242
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 72, 73
BseMI GCAATG 1 cut(s) 4
BseSI GKGCMC 2 cut(s) 179, 188
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 72, 73
Bsp1286I GDGCHC 2 cut(s) 179, 188
BspACI CCGC 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 67, 242
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 183, 256
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 308
BstSLI GKGCMC 2 cut(s) 179, 188
BstV1I GCAGC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 261
Csp6I GTAC 3 cut(s) 90, 158, 367
CviAII CATG 3 cut(s) 22, 154, 349
CviJI RGCY 6 cut(s) 17, 104, 141, 219, 230, 250
CviKI_1 RGCY 6 cut(s) 17, 104, 141, 219, 230, 250
CviQI GTAC 3 cut(s) 90, 158, 367
DdeI CTNAG 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 25, 157, 352
FaiI YATR 3 cut(s) 23, 155, 350
FatI CATG 3 cut(s) 21, 153, 348
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 248
HapII CCGG 1 cut(s) 244
Hin1II CATG 3 cut(s) 25, 157, 352
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 244
HphI GGTGA 2 cut(s) 247, 326
Hpy166II GTNNAC 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 198, 314
HpyCH4V TGCA 5 cut(s) 4, 36, 87, 115, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 256
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 2 cut(s) 198, 314
Hsp92II CATG 3 cut(s) 25, 157, 352
LmnI GCTCC 2 cut(s) 77, 109
LpnPI CCDG 3 cut(s) 27, 218, 257
Lsp1109I GCAGC 1 cut(s) 259
MaeII ACGT 2 cut(s) 198, 314
MboII GAAGA 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 179, 188
MluCI AATT 2 cut(s) 149, 325
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 3 cut(s) 91, 234, 315
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 183, 256
NciI CCSGG 1 cut(s) 244
NlaIII CATG 3 cut(s) 25, 157, 352
NlaIV GGNNCC 1 cut(s) 303
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 303
PstI CTGCAG 1 cut(s) 312
RsaI GTAC 3 cut(s) 91, 159, 368
RsaNI GTAC 3 cut(s) 90, 158, 367
SatI GCNGC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 2 cut(s) 179, 188
SfcI CTRYAG 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 225, 251
SmoI CTYRAG 2 cut(s) 225, 251
Sse9I AATT 2 cut(s) 149, 325
SsiI CCGC 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 201, 317
TaqI TCGA 1 cut(s) 267
TasI AATT 2 cut(s) 149, 325
TfiI GAWTC 1 cut(s) 238
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 10, 142
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 117
XapI RAATTY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 2 cut(s) 131, 209
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.