Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000365.1

Orthogroup ID

OG0016213

Physical Location & Seq

Genomic Coordinates Reverse (-)

370415 .. 373709

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000365.1_g000085.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgcaaggccaaacagctttcaagcttcttctctggacgtctcttacttttgcatctcttctctgccatggatgggaagaaaaatgtactacaaatgatcatgccccaactgtgcaacagtctcaagtagggttcggaagatctccaacattcatggtggaagtgcaaaacaactgcccaatgtgtccggttatcaaccttcatttgaagtgcggaagctttcctcaaactctggtcaatcccaggctactcaaggttttaagcaacaacgactgtgtagttaatagtggtttaccattggcacctctgcaaaagatttccttcaattattctcaccaaatgtatctgatgtctcctaaaatctggtatttccagtccctacccttcgtttctcccccagctatggaagaccttcaccctcactatgtggatattgatgatgcagagctacaggaaaaggacaaagctttagaagaacattccttcctcggcgaagttgaagactcggaagaaaaagaagaaaaagcaaacgctaaaccgatcccaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.69

Weight (kDa)

5.15

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05835
fragaria_vesca	FvH4_4g12240
malus_domestica	MD04G1028300.v1.1
prunus_persica	Prupe.1G177700_v2.0.a1 Prupe.1G177700_v2.0.a1
pyrus_communis	pycom04g02490
rosa_chinensis	RchiOBHm_Chr4g0409991
rosa_laevigata	RLG00000008507
rosa_multiflora	Rmu_sc0000365.1_g000085
rosa_roxburghii	Rroxscaffold_5G00354510
rosa_rugosa	Rorug04G0100600
rosa_samantha	Rh4AG158900 Rh4CG169900 Rh4DG153900
rosa_wichuraiana	Rw4G013130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	301
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	535
AcyI	GRCGYC	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	73, 403
AgsI	TTSAA	4 cut(s)	22, 208, 325, 500
AjnI	CCWGG	1 cut(s)	242
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	6 cut(s)	17, 25, 219, 401, 448, 467
AluI	AGCT	6 cut(s)	17, 25, 219, 401, 448, 467
Alw26I	GTCTC	3 cut(s)	45, 126, 357
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	326, 407
BanI	GGYRCC	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	414, 507
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	244
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	3 cut(s)	45, 126, 357
BfmI	CTRYAG	1 cut(s)	449
BglII	AGATCT	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	62, 430
BpiI	GAAGAC	2 cut(s)	414, 507
BpuEI	CTTGAG	2 cut(s)	108, 236
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	67, 242, 487
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 403
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	3 cut(s)	67, 242, 487
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	73, 403
BseNI	ACTGG	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	73, 403
BsmAI	GTCTC	3 cut(s)	45, 126, 357
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	97, 140, 540
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	67, 242, 487
BssMI	GATC	3 cut(s)	97, 140, 540
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	3 cut(s)	112, 120, 275
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	100, 143, 543
BstMAI	GTCTC	3 cut(s)	45, 126, 357
BstMBI	GATC	3 cut(s)	97, 140, 540
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstSFI	CTRYAG	1 cut(s)	449
BstV2I	GAAGAC	2 cut(s)	414, 507
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	3 cut(s)	68, 101, 154
CviJI	RGCY	8 cut(s)	9, 17, 25, 219, 247, 401, 448, 467
CviKI_1	RGCY	8 cut(s)	9, 17, 25, 219, 247, 401, 448, 467
CviQI	GTAC	1 cut(s)	87
DpnI	GATC	3 cut(s)	99, 142, 542
DpnII	GATC	3 cut(s)	97, 140, 540
DraIII	CACNNNGTG	1 cut(s)	427
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	71, 104, 157
FaiI	YATR	5 cut(s)	69, 102, 155, 404, 426
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	3 cut(s)	67, 100, 153
FbaI	TGATCA	1 cut(s)	97
FokI	GGATG	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	71, 104, 157
HindIII	AAGCTT	3 cut(s)	23, 217, 465
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	326, 407
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	3 cut(s)	137, 348, 508
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	5 cut(s)	209, 331, 394, 422, 493
HpyCH4III	ACNGT	3 cut(s)	112, 120, 275
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	6 cut(s)	4, 53, 115, 166, 310, 443
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	71, 104, 157
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	97, 140, 540
LpnPI	CCDG	9 cut(s)	19, 201, 218, 229, 256, 349, 386, 411, 437
LweI	GCATC	2 cut(s)	62, 430
MaeII	ACGT	1 cut(s)	38
MalI	GATC	3 cut(s)	99, 142, 542
MboI	GATC	3 cut(s)	97, 140, 540
MboII	GAAGA	9 cut(s)	20, 50, 89, 150, 419, 485, 512, 521, 530
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	2 cut(s)	325, 546
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	4 cut(s)	234, 315, 429, 497
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	2 cut(s)	260, 282
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	97, 140, 540
NlaIII	CATG	3 cut(s)	71, 104, 157
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	260, 282
Sau3AI	GATC	3 cut(s)	97, 140, 540
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	244
SfaNI	GCATC	2 cut(s)	62, 430
SfcI	CTRYAG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	123, 251
SmoI	CTYRAG	2 cut(s)	123, 251
Sse9I	AATT	2 cut(s)	325, 546
SsiI	CCGC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	3 cut(s)	112, 120, 275
TaiI	ACGT	1 cut(s)	41
TasI	AATT	2 cut(s)	325, 546
TatI	WGTACW	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	260, 282
Tru9I	TTAA	2 cut(s)	260, 282
TspDTI	ATGAA	2 cut(s)	142, 191
XmnI	GAANNNNTTC	1 cut(s)	411
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.