Rorug04G0100600

histone-lysine N-methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016213
Physical Location & Seq
Forward (+)
15721168 .. 15725561
4394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0100600.1

Sequence Viewer

Length: 867 bp
ATGGCCGAAGAGCCCGTAGTGGTGTTGTCCTCCACCTCTTCATCCCCTAATTTGCCTTCAGAAACTCTCCCCAAATCACAGGTTCCCGCAGTCTCTGGGGGGCTTCCGTCTTTCCCAAATGGTGATCTTCAGATTTTACCAATCATGTATCCAATGCTTGTTCCTGGATTGCAAGATCAGGAACAGAGGAACCGTGGATCGGGCCTTTATGCTGTTCCCGTTCACCCATTTACGGGGCCAGTTACTGGATTTTCGTCTAATACTCTGATTCCTCTTACCTACAATGTACCCACAAGTAGAGCAAGCCCAGATGTTGGCACTGGCGGAGAGCAGCATGGCCAAGAAGGACAGCAACAACCACAACAACAGCGTCAACAGCAACACCCTGGACCTCAGAGACGAGTTGTTGTAAGGAGGTTTCAAATTCAGTTTCGGCTGGATCCGGTTCTTATTCTGAAGCTGATAGCTTTATTACTTTTGTTCAATCAAGATGGATCTAGACAAAAGATGGTCATCCTTGTGATTTGCGCTTCAATTGTCTATTTATATAAAACTGGCTCACTCACACCATTGATAGAATGGCTCTCTCGAGCCATGGATAGGGCAGCTGTGCCTCCCCAACCACCAAGACCTGCAGCCAGGGCTGAAAATGTTCCTCCTGCTGCAAGGCAAGGGAATGATAATGCTGCTTTGCCAGATGGACAACCAGGAGTCGAGAATGAAAATCGACCTGCAGACGCGAATGAGAACGCACCGGAACCGGGAGCCAATGGTGGTAACCGCTGGTGGGGAATTGTCAAAGAGATTCAGATGATTGTTTTTGGCTTCATCACTTCTCTCCTCCCAGGTTTTCATGATATAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.27

Weight (kDa)

6.11

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016213)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05835
fragaria_vesca FvH4_4g12240
malus_domestica MD04G1028300.v1.1
prunus_persica Prupe.1G177700_v2.0.a1 Prupe.1G177700_v2.0.a1
pyrus_communis pycom04g02490
rosa_chinensis RchiOBHm_Chr4g0409991
rosa_laevigata RLG00000008507
rosa_multiflora Rmu_sc0000365.1_g000085
rosa_roxburghii Rroxscaffold_5G00354510
rosa_rugosa Rorug04G0100600
rosa_samantha Rh4AG158900 Rh4CG169900 Rh4DG153900
rosa_wichuraiana Rw4G013130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 640, 739
AccB7I CCANNNNNTGG 2 cut(s) 245, 314
AccII CGCG 1 cut(s) 740
AciI CCGC 3 cut(s) 87, 324, 781
AclWI GGATC 4 cut(s) 205, 434, 447, 502
AcoI YGGCCR 2 cut(s) 3, 337
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 3 cut(s) 42, 113, 476
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 8 cut(s) 199, 232, 233, 245, 314, 600, 761, 787
AgsI TTSAA 3 cut(s) 422, 484, 534
AjnI CCWGG 5 cut(s) 163, 385, 638, 706, 844
AluBI AGCT 3 cut(s) 460, 467, 608
AluI AGCT 3 cut(s) 460, 467, 608
Alw26I GTCTC 2 cut(s) 97, 391
AlwI GGATC 4 cut(s) 205, 434, 447, 502
AlwNI CAGNNNCTG 2 cut(s) 95, 245
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 4 cut(s) 3, 202, 236, 337
ApeKI GCWGC 5 cut(s) 331, 605, 635, 662, 686
ApoI RAATTY 1 cut(s) 423
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 530
AspS9I GGNCC 3 cut(s) 202, 236, 389
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 2 cut(s) 134, 215
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 1 cut(s) 389
BalI TGGCCA 1 cut(s) 339
BamHI GGATCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 343, 617, 647, 649, 673
BccI CCATC 3 cut(s) 485, 502, 692
BciT130I CCWGG 5 cut(s) 165, 387, 640, 708, 846
BciVI GTATCC 1 cut(s) 159
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 97, 391
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 2 cut(s) 633, 732
BfuAI ACCTGC 2 cut(s) 640, 739
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 5 cut(s) 332, 606, 636, 663, 687
BlsI GCNGC 5 cut(s) 333, 607, 637, 664, 688
Bme1390I CCNGG 6 cut(s) 165, 387, 640, 708, 762, 846
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 3 cut(s) 202, 236, 389
BmiI GGNNCC 6 cut(s) 84, 191, 237, 441, 759, 766
BmrFI CCNGG 6 cut(s) 165, 387, 640, 708, 762, 846
BpuMI CCSGG 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 512
BsaJI CCNNGG 5 cut(s) 193, 385, 594, 639, 844
BsaWI WCCGGW 2 cut(s) 442, 754
Bsc4I CCNNNNNNNGG 8 cut(s) 199, 232, 233, 245, 314, 600, 761, 787
Bse1I ACTGG 4 cut(s) 239, 250, 325, 559
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 5 cut(s) 165, 387, 640, 708, 846
BseDI CCNNGG 5 cut(s) 193, 385, 594, 639, 844
BseGI GGATG 2 cut(s) 41, 513
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 8 cut(s) 199, 232, 233, 245, 314, 600, 761, 787
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 4 cut(s) 239, 250, 325, 559
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 5 cut(s) 343, 617, 647, 649, 673
Bsh1236I CGCG 1 cut(s) 740
BshFI GGCC 4 cut(s) 5, 204, 238, 339
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 3 cut(s) 443, 755, 761
BslI CCNNNNNNNGG 8 cut(s) 199, 232, 233, 245, 314, 600, 761, 787
BsmAI GTCTC 2 cut(s) 97, 391
BsmBI CGTCTC 1 cut(s) 391
BsnI GGCC 4 cut(s) 5, 204, 238, 339
BsoBI CYCGRG 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 5 cut(s) 124, 175, 197, 439, 494
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 3 cut(s) 87, 324, 781
BspANI GGCC 4 cut(s) 5, 204, 238, 339
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 740
BspHI TCATGA 1 cut(s) 853
BspLI GGNNCC 6 cut(s) 84, 191, 237, 441, 759, 766
BspMAI CTGCAG 2 cut(s) 637, 736
BspMI ACCTGC 2 cut(s) 640, 739
BspPI GGATC 4 cut(s) 205, 434, 447, 502
BspQI GCTCTTC 1 cut(s) 3
BsrI ACTGG 4 cut(s) 239, 250, 325, 559
BssECI CCNNGG 5 cut(s) 193, 385, 594, 639, 844
BssMI GATC 5 cut(s) 124, 175, 197, 439, 494
BssT1I CCWWGG 1 cut(s) 594
Bst2UI CCWGG 5 cut(s) 165, 387, 640, 708, 846
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 3, 43
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 2 cut(s) 193, 594
BstEII GGTNACC 1 cut(s) 776
BstF5I GGATG 2 cut(s) 41, 513
BstFNI CGCG 1 cut(s) 740
BstHHI GCGC 1 cut(s) 530
BstKTI GATC 5 cut(s) 127, 178, 200, 442, 497
BstMAI GTCTC 2 cut(s) 97, 391
BstMBI GATC 5 cut(s) 124, 175, 197, 439, 494
BstMWI GCNNNNNNNGC 2 cut(s) 376, 641
BstNI CCWGG 5 cut(s) 165, 387, 640, 708, 846
BstPI GGTNACC 1 cut(s) 776
BstSCI CCNGG 6 cut(s) 163, 385, 638, 706, 760, 844
BstSFI CTRYAG 2 cut(s) 633, 732
BstUI CGCG 1 cut(s) 740
BstV1I GCAGC 5 cut(s) 343, 617, 647, 649, 673
BstX2I RGATCY 2 cut(s) 439, 494
BstYI RGATCY 2 cut(s) 439, 494
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 4 cut(s) 5, 204, 238, 339
BtgI CCRYGG 2 cut(s) 193, 594
BtsCI GGATG 2 cut(s) 41, 513
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 2 cut(s) 640, 739
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 2 cut(s) 95, 245
CciI TCATGA 1 cut(s) 853
CfoI GCGC 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 202, 236, 389
CseI GACGC 2 cut(s) 359, 746
Csp6I GTAC 1 cut(s) 287
CviAII CATG 4 cut(s) 145, 335, 595, 854
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 393
DpnI GATC 5 cut(s) 126, 177, 199, 441, 496
DpnII GATC 5 cut(s) 124, 175, 197, 439, 494
EaeI YGGCCR 2 cut(s) 3, 337
Eam1104I CTCTTC 2 cut(s) 3, 43
EarI CTCTTC 2 cut(s) 3, 43
EciI GGCGGA 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 389
Eco57I CTGAAG 3 cut(s) 42, 113, 476
Eco88I CYCGRG 1 cut(s) 588
Eco91I GGTNACC 1 cut(s) 776
EcoO65I GGTNACC 1 cut(s) 776
EcoRII CCWGG 5 cut(s) 163, 385, 638, 706, 844
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 594
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 4 cut(s) 148, 338, 598, 857
FaiI YATR 8 cut(s) 146, 210, 336, 547, 549, 596, 855, 860
FatI CATG 4 cut(s) 144, 334, 594, 853
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 5 cut(s) 332, 606, 636, 663, 687
FokI GGATG 2 cut(s) 28, 500
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 5 cut(s) 332, 606, 636, 663, 687
FspBI CTAG 1 cut(s) 498
GlaI GCGC 1 cut(s) 529
GluI GCNGC 5 cut(s) 332, 606, 636, 663, 687
HaeIII GGCC 4 cut(s) 5, 204, 238, 339
HapII CCGG 3 cut(s) 443, 755, 761
HgaI GACGC 2 cut(s) 359, 746
HhaI GCGC 1 cut(s) 530
Hin1II CATG 4 cut(s) 148, 338, 598, 857
Hin6I GCGC 1 cut(s) 528
HinP1I GCGC 1 cut(s) 528
HincII GTYRAC 1 cut(s) 374
HindII GTYRAC 1 cut(s) 374
HinfI GANTC 3 cut(s) 268, 711, 805
HpaII CCGG 3 cut(s) 443, 755, 761
HphI GGTGA 2 cut(s) 134, 215
Hpy166II GTNNAC 2 cut(s) 223, 374
Hpy188I TCNGA 6 cut(s) 61, 132, 267, 396, 456, 810
Hpy188III TCNNGA 6 cut(s) 179, 488, 498, 588, 715, 854
Hpy8I GTNNAC 2 cut(s) 223, 374
HpyAV CCTTC 2 cut(s) 66, 338
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 4 cut(s) 172, 635, 665, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 641
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 4 cut(s) 148, 338, 598, 857
HspAI GCGC 1 cut(s) 528
Kzo9I GATC 5 cut(s) 124, 175, 197, 439, 494
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 764
Lsp1109I GCAGC 5 cut(s) 343, 617, 647, 649, 673
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 241, 776
MalI GATC 5 cut(s) 126, 177, 199, 441, 496
MboI GATC 5 cut(s) 124, 175, 197, 439, 494
MboII GAAGA 3 cut(s) 20, 30, 119
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 2 cut(s) 439, 494
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 4 cut(s) 49, 423, 534, 792
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 720
MnlI CCTC 9 cut(s) 40, 46, 180, 282, 402, 408, 624, 666, 851
Mox20I TGGCCA 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 1 cut(s) 339
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 339
MspA1I CMGCKG 2 cut(s) 608, 783
MspI CCGG 3 cut(s) 443, 755, 761
MspR9I CCNGG 6 cut(s) 165, 387, 640, 708, 762, 846
MunI CAATTG 1 cut(s) 534
MvaI CCWGG 5 cut(s) 165, 387, 640, 708, 846
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 2 cut(s) 376, 641
NciI CCSGG 1 cut(s) 762
NcoI CCATGG 1 cut(s) 594
NdeII GATC 5 cut(s) 124, 175, 197, 439, 494
NlaIII CATG 4 cut(s) 148, 338, 598, 857
NlaIV GGNNCC 6 cut(s) 84, 191, 237, 441, 759, 766
PaeR7I CTCGAG 1 cut(s) 588
PagI TCATGA 1 cut(s) 853
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 2 cut(s) 268, 805
PflMI CCANNNNNTGG 2 cut(s) 245, 314
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 5 cut(s) 333, 607, 637, 664, 688
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
Psp6I CCWGG 5 cut(s) 163, 385, 638, 706, 844
PspEI GGTNACC 1 cut(s) 776
PspGI CCWGG 5 cut(s) 163, 385, 638, 706, 844
PspN4I GGNNCC 6 cut(s) 84, 191, 237, 441, 759, 766
PspPI GGNCC 3 cut(s) 202, 236, 389
PstI CTGCAG 2 cut(s) 637, 736
PstNI CAGNNNCTG 2 cut(s) 95, 245
PsuI RGATCY 2 cut(s) 439, 494
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 5 cut(s) 332, 606, 636, 663, 687
Sau3AI GATC 5 cut(s) 124, 175, 197, 439, 494
Sau96I GGNCC 3 cut(s) 202, 236, 389
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 6 cut(s) 165, 387, 640, 708, 762, 846
SduI GDGCHC 1 cut(s) 15
SfcI CTRYAG 2 cut(s) 633, 732
Sfr274I CTCGAG 1 cut(s) 588
SinI GGWCC 1 cut(s) 389
SlaI CTCGAG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse9I AATT 4 cut(s) 49, 423, 534, 792
SsiI CCGC 3 cut(s) 87, 324, 781
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 6 cut(s) 163, 385, 638, 706, 760, 844
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 589, 714, 727
TasI AATT 4 cut(s) 49, 423, 534, 792
TfiI GAWTC 2 cut(s) 268, 805
TscAI CASTG 1 cut(s) 325
TseI GCWGC 5 cut(s) 331, 605, 635, 662, 686
TspDTI ATGAA 4 cut(s) 30, 735, 817, 842
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 2 cut(s) 245, 314
VpaK11BI GGWCC 1 cut(s) 389
XapI RAATTY 1 cut(s) 423
XbaI TCTAGA 1 cut(s) 497
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XhoI CTCGAG 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.