Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Forward (+)

1916430 .. 1917585

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTGAATGTACTTCGAAATTCTAACCTGACCCTTGCCGTTTTGATTTGCTTTGTCTTGATAGCTTCAAAGCTATGTTCCGTCGATTCCTCTGTGTATGACCCACACAAAACCCTGAAGCAGCGGTTCGAGAAGTGGCTTAAAACCCACAGCAAATTATATGGAGGAAGGGATGAGTGGATGCTACGGTTTGGGATATATCAGTCTAACGTCCAGTTGATTGACTACATCAACTCCCTCCACTTGCCCTTTAAGCTAACGGATAATAGATTTGCAGATATGACCAATTCTGAGTTTAAGGCCCATTTTCTCGGGTTGAACACGTCTTCCTTGAGGTTACACAAGAAGCAGAGACCAGTTTGTGACCCAGCAGGCAATGTCCCGGACGCTGTGGACTGGAGGACTCAAGGTGCTGTGACTCCTATCAGAAATCAAGGAAAATGCGGAGGTTGCTGGGCATTCTCTGCAGTAGCAGCTATTGAAGGCATCAACAAGATTAAAACAGGGAATTTAGTGTCTCTCTCAGAACAACAACTCATAGATTGTGATGTCGGCACTTACAACAAAGGCTGTAGTGGCGGATTAATGGAAACAGCATTTGAATTCATCAAAACCAATGGTGGACTCGCCACGGAGACCGACTACCCATACACAGGCATAGAGGGTACCTGCGACCAAGAAAAATCCAAAAATAAGGTAGTTACGATACAAGGATACCAAAAGGTAGCCCAAAACGAGGCGAGCCTACAAATCGCTGCAGCTCAACAGCCAGTATCAGTTGGAATCGATGCTGGTGGGTTTATCTTTCAGCTCTACTCCTCCGGTGTTTTCACAAATTACTGTGGAACAAATCTCAACCATGGAGTGACTGTTGTTGGATATGGAGTAGAAGGCGATCAAAAGTACTGGATCGTAAAGAATTCATGGGGAACTGGCTGGGGTGAAGAAGGCTACATACGGATGGAGCGTGGTGTAAGTGAAGACACGGGTAAATGTGGTATTGCTATGATGGCAAGCTATCCCTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

343

Amino Acids

37.77

Weight (kDa)

7.51

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	43 - 99	1.3e-12	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	127 - 341	5.4e-83	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	677
Acc65I	GGTACC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	665
AciI	CCGC	3 cut(s)	124, 444, 579
AclWI	GGATC	1 cut(s)	917
AcsI	RAATTY	4 cut(s)	19, 508, 602, 919
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	12, 667, 905
AfiI	CCNNNNNNNGG	2 cut(s)	653, 736
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	4 cut(s)	69, 319, 482, 602
AjiI	CACGTC	1 cut(s)	324
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	7 cut(s)	65, 73, 256, 476, 761, 811, 1017
AluI	AGCT	7 cut(s)	65, 73, 256, 476, 761, 811, 1017
Alw26I	GTCTC	3 cut(s)	346, 522, 629
AlwI	GGATC	1 cut(s)	917
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	121, 473, 755, 758
ApoI	RAATTY	4 cut(s)	19, 508, 602, 919
AseI	ATTAAT	1 cut(s)	584
Asp718I	GGTACC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	953
AsuII	TTCGAA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	665
BarI	GAAGNNNNNNTAC	2 cut(s)	939, 971
BbsI	GAAGAC	2 cut(s)	318, 987
BbvI	GCAGC	4 cut(s)	133, 485, 742, 770
BccI	CCATC	2 cut(s)	955, 1003
BceAI	ACGGC	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	3 cut(s)	346, 522, 629
BfmI	CTRYAG	3 cut(s)	465, 571, 756
BfuAI	ACCTGC	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	4 cut(s)	122, 474, 756, 759
BlsI	GCNGC	4 cut(s)	123, 475, 757, 760
BmcAI	AGTACT	1 cut(s)	905
Bme1390I	CCNGG	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	3 cut(s)	171, 495, 778
BpiI	GAAGAC	2 cut(s)	318, 987
BpmI	CTGGAG	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	16
BpuEI	CTTGAG	2 cut(s)	352, 390
BpuMI	CCSGG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	786
BsaI	GGTCTC	2 cut(s)	346, 629
BsaJI	CCNNGG	2 cut(s)	630, 859
BsaWI	WCCGGW	1 cut(s)	821
BsaXI	ACNNNNNCTCC	4 cut(s)	218, 248, 855, 885
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 736
Bse1I	ACTGG	6 cut(s)	214, 356, 401, 770, 911, 937
Bse3DI	GCAATG	1 cut(s)	382
BseCI	ATCGAT	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	630, 859
BseGI	GGATG	3 cut(s)	178, 186, 966
BseLI	CCNNNNNNNGG	2 cut(s)	653, 736
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	282, 537
BseNI	ACTGG	6 cut(s)	214, 356, 401, 770, 911, 937
BseRI	GAGGAG	1 cut(s)	808
BseXI	GCAGC	4 cut(s)	133, 485, 742, 770
BseYI	CCCAGC	3 cut(s)	367, 453, 936
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	665
BshVI	ATCGAT	1 cut(s)	786
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	383, 822
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	653, 736
BsmAI	GTCTC	3 cut(s)	346, 522, 629
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	2 cut(s)	346, 629
BsoBI	CYCGRG	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	895, 909
Bsp19I	CCATGG	1 cut(s)	859
BspACI	CCGC	3 cut(s)	124, 444, 579
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	2 cut(s)	283, 536
BspDI	ATCGAT	1 cut(s)	786
BspLI	GGNNCC	1 cut(s)	667
BspMAI	CTGCAG	2 cut(s)	469, 760
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	917
BspT104I	TTCGAA	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	665
BspTNI	GGTCTC	2 cut(s)	346, 629
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	6 cut(s)	214, 356, 401, 770, 911, 937
BssECI	CCNNGG	2 cut(s)	630, 859
BssMI	GATC	2 cut(s)	895, 909
BssT1I	CCWWGG	1 cut(s)	859
Bst4CI	ACNGT	3 cut(s)	189, 842, 871
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	373, 742, 1015
BstDEI	CTNAG	2 cut(s)	291, 523
BstDSI	CCRYGG	2 cut(s)	630, 859
BstF5I	GGATG	3 cut(s)	178, 186, 966
BstKTI	GATC	2 cut(s)	898, 912
BstMAI	GTCTC	3 cut(s)	346, 522, 629
BstMBI	GATC	2 cut(s)	895, 909
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 450, 464, 473, 576, 1010
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	3 cut(s)	465, 571, 756
BstV1I	GCAGC	4 cut(s)	133, 485, 742, 770
BstV2I	GAAGAC	2 cut(s)	318, 987
Bsu15I	ATCGAT	1 cut(s)	786
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	302
BsuTUI	ATCGAT	1 cut(s)	786
BtgI	CCRYGG	2 cut(s)	630, 859
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	178, 186, 966
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	3 cut(s)	373, 742, 1015
Cfr13I	GGNCC	1 cut(s)	301
ClaI	ATCGAT	1 cut(s)	786
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	11, 666, 904
CviAII	CATG	2 cut(s)	860, 924
CviQI	GTAC	3 cut(s)	11, 666, 904
DdeI	CTNAG	2 cut(s)	291, 523
DpnI	GATC	2 cut(s)	897, 911
DpnII	GATC	2 cut(s)	895, 909
EciI	GGCGGA	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	859
Eco31I	GGTCTC	2 cut(s)	346, 629
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	311
EcoRI	GAATTC	2 cut(s)	602, 919
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	2 cut(s)	863, 927
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	859, 923
Fnu4HI	GCNGC	4 cut(s)	122, 474, 756, 759
FokI	GGATG	3 cut(s)	185, 193, 973
Fsp4HI	GCNGC	4 cut(s)	122, 474, 756, 759
GluI	GCNGC	4 cut(s)	122, 474, 756, 759
GsaI	CCCAGC	3 cut(s)	371, 457, 940
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	2 cut(s)	383, 822
HgaI	GACGC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	863, 927
HinfI	GANTC	5 cut(s)	86, 403, 418, 624, 783
HpaII	CCGG	2 cut(s)	383, 822
HphI	GGTGA	1 cut(s)	953
Hpy166II	GTNNAC	2 cut(s)	394, 623
Hpy188I	TCNGA	3 cut(s)	292, 428, 526
Hpy188III	TCNNGA	2 cut(s)	58, 130
Hpy8I	GTNNAC	2 cut(s)	394, 623
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	162, 476, 884, 941
HpyCH4III	ACNGT	3 cut(s)	189, 842, 871
HpyCH4IV	ACGT	2 cut(s)	210, 323
HpyCH4V	TGCA	4 cut(s)	275, 467, 758, 1027
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 450, 464, 473, 576, 1010
HpyF3I	CTNAG	2 cut(s)	291, 523
HpySE526I	ACGT	2 cut(s)	210, 323
Hsp92II	CATG	2 cut(s)	863, 927
KpnI	GGTACC	1 cut(s)	669
Kzo9I	GATC	2 cut(s)	895, 909
LmnI	GCTCC	1 cut(s)	964
Lsp1109I	GCAGC	4 cut(s)	133, 485, 742, 770
LweI	GCATC	3 cut(s)	171, 495, 778
MaeII	ACGT	2 cut(s)	210, 323
MaeIII	GTNAC	5 cut(s)	336, 362, 415, 700, 865
MalI	GATC	2 cut(s)	897, 911
MboI	GATC	2 cut(s)	895, 909
MboII	GAAGA	3 cut(s)	318, 956, 992
MluCI	AATT	7 cut(s)	19, 155, 286, 508, 602, 835, 919
MlyI	GAGTC	3 cut(s)	397, 412, 618
MmeI	TCCRAC	2 cut(s)	760, 856
MnlI	CCTC	9 cut(s)	100, 158, 248, 327, 393, 440, 655, 730, 829
MseI	TTAA	5 cut(s)	141, 252, 297, 498, 584
MslI	CAYNNNNRTG	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	2 cut(s)	383, 822
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	458
MwoI	GCNNNNNNNGC	6 cut(s)	253, 450, 464, 473, 576, 1010
NciI	CCSGG	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	2 cut(s)	895, 909
NlaIII	CATG	2 cut(s)	863, 927
NlaIV	GGNNCC	1 cut(s)	667
NmuCI	GTSAC	3 cut(s)	362, 415, 865
NspV	TTCGAA	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	964
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	86, 783
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	4 cut(s)	123, 475, 757, 760
PleI	GAGTC	3 cut(s)	397, 412, 618
PpsI	GAGTC	3 cut(s)	397, 412, 618
PshBI	ATTAAT	1 cut(s)	584
PspFI	CCCAGC	3 cut(s)	367, 453, 936
PspN4I	GGNNCC	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	469, 760
RsaI	GTAC	3 cut(s)	12, 667, 905
RsaNI	GTAC	3 cut(s)	11, 666, 904
RseI	CAYNNNNRTG	1 cut(s)	959
SaqAI	TTAA	5 cut(s)	141, 252, 297, 498, 584
SatI	GCNGC	4 cut(s)	122, 474, 756, 759
Sau3AI	GATC	2 cut(s)	895, 909
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	1 cut(s)	905
SchI	GAGTC	3 cut(s)	397, 412, 618
ScrFI	CCNGG	1 cut(s)	383
SfaNI	GCATC	3 cut(s)	171, 495, 778
SfcI	CTRYAG	3 cut(s)	465, 571, 756
SfuI	TTCGAA	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	959
SmlI	CTYRAG	2 cut(s)	331, 405
SmoI	CTYRAG	2 cut(s)	331, 405
Sse9I	AATT	7 cut(s)	19, 155, 286, 508, 602, 835, 919
SsiI	CCGC	3 cut(s)	124, 444, 579
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	3 cut(s)	189, 842, 871
TaiI	ACGT	2 cut(s)	213, 326
TaqI	TCGA	4 cut(s)	16, 84, 129, 786
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	7 cut(s)	19, 155, 286, 508, 602, 835, 919
TatI	WGTACW	2 cut(s)	10, 903
TfiI	GAWTC	2 cut(s)	86, 783
Tru1I	TTAA	5 cut(s)	141, 252, 297, 498, 584
Tru9I	TTAA	5 cut(s)	141, 252, 297, 498, 584
TseFI	GTSAC	3 cut(s)	362, 415, 865
TseI	GCWGC	4 cut(s)	121, 473, 755, 758
Tsp45I	GTSAC	3 cut(s)	362, 415, 865
TspDTI	ATGAA	2 cut(s)	595, 912
TspGWI	ACGGA	4 cut(s)	70, 275, 647, 973
VspI	ATTAAT	1 cut(s)	584
XapI	RAATTY	4 cut(s)	19, 508, 602, 919
ZrmI	AGTACT	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.