Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Forward (+)

8300619 .. 8302472

Gene Structure 1854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGACATCTATAATGTTAAGGTGTGCTAGCTTTATGTTGTTACTAGTTTGGACGCTGTGTATTTCATCATCCCTGGCATGTAGTGAGAGGCAGAAGCCGGTAGAGAATGATCAGAATGCCATGAAGGAGAGGTACGAAAGGTGGCTGGCAAAATATGACCGAAGATACAAGAATAGAGATGAGTGGGAACACCGTTTCGGAATTTACCAGTCCAACGTTGAGCTTATCGATTTCATAAACTCTCAAAACCTGTCATACAAACTTACTGACAACGTATTTGCAGACATGACAAACCAAGAGTTTACAACCACCCACTTGGGTTTTCGAGCTGGTAGAAATCCAAAGACAAAGTTCAGGTATGAGGGGATGAAGGGCTTGCCGACTACAGTGGATTGGAGAAAGAATGGCAGTGTAACTCCTGTCAGGGATCAAGGCCGATGTGGTAGCTGTTGGGCATTCTCTGCAGTTGCAGCTGTGGAAGGCCTTCACAAAATCAATACCGGAAAACTGGTGCCACTCTCAGAACAAGAGCTTGTAGACTGCGACGTAAACACTGGGAACCAAGGTTGCAGAGGTGGATTCATGGAAAATGCATTTGATTACATAAGAAAGTACGGAATCACTACCCAGAAGGATTATCCCTACACAGGATCAGACGGCACCTGCAACAAATCTAAACAGAAAAAATCTGGTGTGAAAATAGGCGGCTACGAAACAGTGCCTGAGAATGATGAGAAGAGCCTACAAGCTGCAGTTGCTCATCAACCTGTCTCTGTAGCAATTGATGCCAGCGGTTTTGCTATGCAACTCTACTCTTCTGGTATCTTCAGCGGCCTGCTATGTGGTAAGAGCCTTGACCATGGAGTCACAGCAGTCGGATATGGAGAAGAAAATGGTCTCAAGTACTGGATTGTGAAAAACTCTTGGGGTACTAACTGGGGTGAATCTGGTTATATCAGAATAACAAGAGATTATATTGACAAGGAAGGTGCTTGCGGCATTGCTATGATGTCAAGCTACCCTGTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

345

Amino Acids

38.62

Weight (kDa)

8.22

Isoelectric Point (pI)

21.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	46 - 102	5.1e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	127 - 343	2.3e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	674
AasI	GACNNNNNNGTC	1 cut(s)	866
Acc36I	ACCTGC	1 cut(s)	674
AccB1I	GGYRCC	2 cut(s)	514, 662
AccI	GTMKAC	1 cut(s)	540
AciI	CCGC	4 cut(s)	708, 795, 834, 999
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	2 cut(s)	438, 661
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	814
AfaI	GTAC	4 cut(s)	137, 617, 908, 934
AfiI	CCNNNNNNNGG	1 cut(s)	650
AhlI	ACTAGT	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	8 cut(s)	33, 226, 332, 450, 476, 535, 752, 1020
AluI	AGCT	8 cut(s)	33, 226, 332, 450, 476, 535, 752, 1020
Alw26I	GTCTC	2 cut(s)	778, 905
AlwI	GGATC	2 cut(s)	438, 661
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	436, 484, 835
ApeKI	GCWGC	2 cut(s)	473, 752
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	956
AsuNHI	GCTAGC	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	514, 662
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbvI	GCAGC	2 cut(s)	485, 739
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	2 cut(s)	778, 905
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	2 cut(s)	30, 47
BfmI	CTRYAG	4 cut(s)	387, 465, 753, 777
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	5 cut(s)	474, 709, 753, 835, 1000
BlsI	GCNGC	5 cut(s)	475, 710, 754, 836, 1001
BmcAI	AGTACT	1 cut(s)	908
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	516, 563, 664
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	2 cut(s)	567, 949
BmsI	GCATC	1 cut(s)	778
BmtI	GCTAGC	1 cut(s)	33
BmuI	ACTGGG	2 cut(s)	567, 949
BpuEI	CTTGAG	1 cut(s)	887
Bsa29I	ATCGAT	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	3 cut(s)	75, 565, 862
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	5 cut(s)	211, 516, 562, 914, 944
Bse3DI	GCAATG	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	75, 565, 862
BseGI	GGATG	2 cut(s)	71, 375
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	2 cut(s)	537, 717
BseNI	ACTGG	5 cut(s)	211, 516, 562, 914, 944
BseXI	GCAGC	2 cut(s)	485, 739
BshFI	GGCC	3 cut(s)	438, 486, 837
BshNI	GGYRCC	2 cut(s)	514, 662
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	101, 504
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	2 cut(s)	778, 905
BsmI	GAATGC	2 cut(s)	124, 458
BsnI	GGCC	3 cut(s)	438, 486, 837
Bso31I	GGTCTC	1 cut(s)	905
Bsp143I	GATC	3 cut(s)	112, 430, 653
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	4 cut(s)	708, 795, 834, 999
BspANI	GGCC	3 cut(s)	438, 486, 837
BspCNI	CTCAG	2 cut(s)	536, 718
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	516, 563, 664
BspMAI	CTGCAG	2 cut(s)	469, 757
BspMI	ACCTGC	1 cut(s)	674
BspOI	GCTAGC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	438, 661
BspQI	GCTCTTC	1 cut(s)	734
BspT107I	GGYRCC	2 cut(s)	514, 662
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	1002
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	5 cut(s)	211, 516, 562, 914, 944
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	75, 565, 862
BssMI	GATC	3 cut(s)	112, 430, 653
BssT1I	CCWWGG	2 cut(s)	565, 862
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	3 cut(s)	197, 391, 721
Bst6I	CTCTTC	2 cut(s)	734, 823
BstAPI	GCANNNNNTGC	2 cut(s)	464, 788
BstC8I	GCNNGC	6 cut(s)	31, 150, 380, 793, 839, 997
BstDEI	CTNAG	2 cut(s)	523, 726
BstDSI	CCRYGG	1 cut(s)	862
BstF5I	GGATG	2 cut(s)	71, 375
BstKTI	GATC	3 cut(s)	115, 433, 656
BstMAI	GTCTC	2 cut(s)	778, 905
BstMBI	GATC	3 cut(s)	112, 430, 653
BstMWI	GCNNNNNNNGC	4 cut(s)	464, 473, 758, 788
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	4 cut(s)	387, 465, 753, 777
BstV1I	GCAGC	2 cut(s)	485, 739
BstXI	CCANNNNNNTGG	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	438, 486, 837
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	862
BtsCI	GGATG	2 cut(s)	71, 375
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	4 cut(s)	396, 418, 555, 726
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	6 cut(s)	31, 150, 380, 793, 839, 997
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr10I	RCCGGY	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	4 cut(s)	136, 616, 907, 933
CviAII	CATG	5 cut(s)	81, 124, 289, 586, 863
CviQI	GTAC	4 cut(s)	136, 616, 907, 933
DdeI	CTNAG	2 cut(s)	523, 726
DpnI	GATC	3 cut(s)	114, 432, 655
DpnII	GATC	3 cut(s)	112, 430, 653
DrdI	GACNNNNNNGTC	1 cut(s)	866
DseDI	GACNNNNNNGTC	1 cut(s)	866
Eam1104I	CTCTTC	2 cut(s)	734, 823
EarI	CTCTTC	2 cut(s)	734, 823
Eco130I	CCWWGG	2 cut(s)	565, 862
Eco147I	AGGCCT	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	565, 862
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	2 cut(s)	565, 862
FaeI	CATG	5 cut(s)	84, 127, 292, 589, 866
FatI	CATG	5 cut(s)	80, 123, 288, 585, 862
FbaI	TGATCA	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	5 cut(s)	474, 709, 753, 835, 1000
FokI	GGATG	2 cut(s)	58, 382
Fsp4HI	GCNGC	5 cut(s)	474, 709, 753, 835, 1000
FspBI	CTAG	2 cut(s)	30, 47
GluI	GCNGC	5 cut(s)	474, 709, 753, 835, 1000
HaeIII	GGCC	3 cut(s)	438, 486, 837
HapII	CCGG	2 cut(s)	101, 504
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	84, 127, 292, 589, 866
HinfI	GANTC	4 cut(s)	582, 621, 867, 947
HpaII	CCGG	2 cut(s)	101, 504
HphI	GGTGA	1 cut(s)	956
Hpy166II	GTNNAC	3 cut(s)	306, 541, 553
Hpy188I	TCNGA	6 cut(s)	117, 203, 526, 658, 881, 962
Hpy8I	GTNNAC	3 cut(s)	306, 541, 553
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	6 cut(s)	121, 367, 476, 497, 628, 983
HpyCH4III	ACNGT	3 cut(s)	197, 391, 721
HpyCH4IV	ACGT	3 cut(s)	219, 276, 549
HpyCH4V	TGCA	8 cut(s)	284, 467, 473, 573, 596, 669, 755, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	464, 473, 758, 788
HpyF3I	CTNAG	2 cut(s)	523, 726
HpySE526I	ACGT	3 cut(s)	219, 276, 549
Hsp92II	CATG	5 cut(s)	84, 127, 292, 589, 866
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	112, 430, 653
LguI	GCTCTTC	1 cut(s)	734
Lsp1109I	GCAGC	2 cut(s)	485, 739
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	2 cut(s)	30, 47
MaeII	ACGT	3 cut(s)	219, 276, 549
MaeIII	GTNAC	3 cut(s)	42, 415, 868
MalI	GATC	3 cut(s)	114, 432, 655
MboI	GATC	3 cut(s)	112, 430, 653
MboII	GAAGA	5 cut(s)	177, 751, 810, 820, 902
MfeI	CAATTG	1 cut(s)	783
MluCI	AATT	2 cut(s)	204, 783
MlyI	GAGTC	1 cut(s)	876
MmeI	TCCRAC	2 cut(s)	240, 859
MnlI	CCTC	4 cut(s)	84, 126, 358, 569
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	1007
MspA1I	CMGCKG	3 cut(s)	476, 795, 834
MspI	CCGG	2 cut(s)	101, 504
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	2 cut(s)	124, 458
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	464, 473, 758, 788
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	3 cut(s)	112, 430, 653
NheI	GCTAGC	1 cut(s)	29
NlaIII	CATG	5 cut(s)	84, 127, 292, 589, 866
NlaIV	GGNNCC	3 cut(s)	516, 563, 664
NmuCI	GTSAC	1 cut(s)	868
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	84
PaqCI	CACCTGC	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	486
PciSI	GCTCTTC	1 cut(s)	734
PctI	GAATGC	2 cut(s)	124, 458
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	582, 621, 947
PkrI	GCNGC	5 cut(s)	475, 710, 754, 836, 1001
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	516, 563, 664
PstI	CTGCAG	2 cut(s)	469, 757
PstNI	CAGNNNCTG	1 cut(s)	725
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	137, 617, 908, 934
RsaNI	GTAC	4 cut(s)	136, 616, 907, 933
RseI	CAYNNNNRTG	1 cut(s)	1007
SapI	GCTCTTC	1 cut(s)	734
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	5 cut(s)	474, 709, 753, 835, 1000
Sau3AI	GATC	3 cut(s)	112, 430, 653
ScaI	AGTACT	1 cut(s)	908
SchI	GAGTC	1 cut(s)	876
ScrFI	CCNGG	1 cut(s)	77
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	4 cut(s)	387, 465, 753, 777
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	2 cut(s)	204, 783
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	4 cut(s)	708, 795, 834, 999
SspMI	CTAG	2 cut(s)	30, 47
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	2 cut(s)	565, 862
TaaI	ACNGT	3 cut(s)	197, 391, 721
TaiI	ACGT	3 cut(s)	222, 279, 552
TaqI	TCGA	2 cut(s)	231, 328
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	204, 783
TatI	WGTACW	1 cut(s)	906
TauI	GCSGC	3 cut(s)	711, 837, 1002
TfiI	GAWTC	3 cut(s)	582, 621, 947
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	4 cut(s)	396, 418, 562, 726
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	2 cut(s)	473, 752
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	5 cut(s)	57, 140, 226, 386, 574
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	4 cut(s)	396, 418, 562, 726
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	2 cut(s)	30, 47
ZrmI	AGTACT	1 cut(s)	908
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.