Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Reverse (-)

31218887 .. 31221840

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGGTTTTTGTTATTGTCAAGGATGGCAAGGTTATTGGTCAAGGGTTTCACCCTAAAGCTGGCCAACTTCATATTGAGGTTCTTGATCTGAGATATGCTGGTGATGTGGCTGAGAATGCAACAGCATATAAGCCGATAGGGTATGAGCAAAAATCCATGAAGGAGAGGTACGAAAGGTGGCTGACAAAATACGACCGAAGATACAAGAATAGAGAGGAGTGGGAATATCGTTTCGGAATTTACCAGTCCAACGTTGAGCTTGTTGATTTCATAAACTCTCAAAACCTGTCATACAAACTCACTGACAACAAATTTGCAGACATGACAAACTTAGAGTTTACAAGAACCCACTTGGGTCTCCAAGCTGGTAGAAATCCAAAGACGAAGTTCAGGTATGAGTGGAAGAAGGACTTGCCAACTACGGTGGATTGGAGAAAGAATGGGAGCGTAACTCCGGTCAGGGATCAAGGCCGATGTGGTAGCTGTTGGGCATTCTCTGCAGTTGCCGCTGTGGAAGGCCTTCACGAAATCAATACTGGAAAACTGGTGTCACTCTCGGAACAAGAGCTTGTGGACTGTGACGTAAATACTGGGAACCAAGGTTGCAATGGTGGATACATGGAAAATGCATTTGATTACATAAAAAAGCATGGACTCACCACTCGAGAAGAGTATCCCTACACAGGATCAGATGGCACCTGCAATAAAGCTAAACAGAAAAAATATGCTGTGAAAATAGGCGGCTATGAAACAGTACCTGATAATGACGAAAAAAGCTTACAAGCTGCGGTTGCTCATCAACCTGTCTCGGTTGCAATTGACGCCGGTGGTTTTGCTATGCAACTCTACTCTTCCGGTATCTTCACTGGCCTGCTATGTGGCAAGAGTCTCAACCATGGAGTGACAGCAGTCGGATATGGTGAAGAAAATGGTAACAAGTACTGGATTGTGAAAAACTCTTGGGGTCCTAACTGGGGTGAATCTGGTTATATCAGAATGACACGTGATTCTATTGATAAGGAAGGCGCTTGCGGCATTGCTATGATGTCAAGCTACCCTGTTAAGTCTCGAAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

361

Amino Acids

40.48

Weight (kDa)

8.47

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	58 - 114	1.6e-13	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	139 - 355	3.2e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	698
AciI	CCGC	4 cut(s)	510, 744, 791, 1035
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	2 cut(s)	474, 697
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	240, 314
AcvI	CACGTG	1 cut(s)	1007
AcyI	GRCGYC	1 cut(s)	825
AfaI	GTAC	3 cut(s)	173, 759, 944
AfiI	CCNNNNNNNGG	3 cut(s)	62, 686, 977
AflIII	ACRYGT	1 cut(s)	1004
AluBI	AGCT	9 cut(s)	62, 262, 368, 486, 571, 713, 780, 788, 1056
AluI	AGCT	9 cut(s)	62, 262, 368, 486, 571, 713, 780, 788, 1056
Alw26I	GTCTC	4 cut(s)	365, 814, 896, 1074
AlwI	GGATC	2 cut(s)	474, 697
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	666
AoxI	GGCC	4 cut(s)	64, 472, 520, 871
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	2 cut(s)	240, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	1031
AspS9I	GGNCC	1 cut(s)	968
AsuHPI	GGTGA	5 cut(s)	44, 116, 652, 935, 992
AvaI	CYCGRG	1 cut(s)	666
AvaII	GGWCC	1 cut(s)	968
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	698
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BbrPI	CACGTG	1 cut(s)	1007
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	20, 689
BciVI	GTATCC	2 cut(s)	611, 687
BcoDI	GTCTC	4 cut(s)	365, 814, 896, 1074
BfmI	CTRYAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	1032
BfuAI	ACCTGC	1 cut(s)	710
BfuI	GTATCC	2 cut(s)	611, 687
BisI	GCNGC	4 cut(s)	510, 745, 789, 1036
BlsI	GCNGC	4 cut(s)	511, 746, 790, 1037
BmcAI	AGTACT	1 cut(s)	944
Bme18I	GGWCC	1 cut(s)	968
BmeT110I	CYCGRG	1 cut(s)	666
BmgT120I	GGNCC	1 cut(s)	968
BmiI	GGNNCC	3 cut(s)	599, 700, 969
BmrI	ACTGGG	2 cut(s)	603, 985
BmuI	ACTGGG	2 cut(s)	603, 985
BoxI	GACNNNNGTC	1 cut(s)	911
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BsaAI	YACGTR	1 cut(s)	1007
BsaHI	GRCGYC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	601, 898
BsaWI	WCCGGW	2 cut(s)	457, 857
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 686, 977
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	7 cut(s)	247, 544, 552, 598, 874, 950, 980
Bse3DI	GCAATG	2 cut(s)	616, 1038
BseDI	CCNNGG	2 cut(s)	601, 898
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	62, 686, 977
BseMI	GCAATG	2 cut(s)	616, 1038
BseMII	CTCAG	2 cut(s)	83, 105
BseNI	ACTGG	7 cut(s)	247, 544, 552, 598, 874, 950, 980
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	775
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	66, 474, 522, 873
BshNI	GGYRCC	1 cut(s)	698
BsiEI	CGRYCG	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	3 cut(s)	458, 828, 858
BslI	CCNNNNNNNGG	3 cut(s)	62, 686, 977
BsmAI	GTCTC	4 cut(s)	365, 814, 896, 1074
BsmI	GAATGC	2 cut(s)	124, 494
BsnI	GGCC	4 cut(s)	66, 474, 522, 873
Bso31I	GGTCTC	1 cut(s)	365
BsoBI	CYCGRG	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	88, 466, 689
Bsp19I	CCATGG	1 cut(s)	898
BspACI	CCGC	4 cut(s)	510, 744, 791, 1035
BspANI	GGCC	4 cut(s)	66, 474, 522, 873
BspCNI	CTCAG	2 cut(s)	84, 106
BspLI	GGNNCC	3 cut(s)	599, 700, 969
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	710
BspPI	GGATC	2 cut(s)	474, 697
BspT107I	GGYRCC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	2 cut(s)	616, 1038
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	7 cut(s)	247, 544, 552, 598, 874, 950, 980
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	601, 898
BssMI	GATC	3 cut(s)	88, 466, 689
BssNI	GRCGYC	1 cut(s)	825
BssT1I	CCWWGG	2 cut(s)	601, 898
Bst4CI	ACNGT	3 cut(s)	427, 581, 757
Bst6I	CTCTTC	2 cut(s)	666, 859
BstACI	GRCGYC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	1007
BstC8I	GCNNGC	3 cut(s)	64, 875, 1033
BstDEI	CTNAG	3 cut(s)	92, 114, 334
BstDSI	CCRYGG	1 cut(s)	898
BstF5I	GGATG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	1032
BstHHI	GCGC	1 cut(s)	1031
BstKTI	GATC	3 cut(s)	91, 469, 692
BstMAI	GTCTC	4 cut(s)	365, 814, 896, 1074
BstMBI	GATC	3 cut(s)	88, 466, 689
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 500, 509, 794, 824, 1035
BstPAI	GACNNNNGTC	1 cut(s)	911
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	775
BsuI	GTATCC	2 cut(s)	611, 687
BsuRI	GGCC	4 cut(s)	66, 474, 522, 873
BtgI	CCRYGG	1 cut(s)	898
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	303, 867
BveI	ACCTGC	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	64, 875, 1033
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	1031
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	1 cut(s)	968
CseI	GACGC	1 cut(s)	833
Csp6I	GTAC	3 cut(s)	172, 758, 943
CspCI	CAANNNNNGTGG	2 cut(s)	408, 443
CviAII	CATG	5 cut(s)	160, 325, 622, 653, 899
CviQI	GTAC	3 cut(s)	172, 758, 943
DdeI	CTNAG	3 cut(s)	92, 114, 334
DpnI	GATC	3 cut(s)	90, 468, 691
DpnII	GATC	3 cut(s)	88, 466, 689
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	666, 859
EarI	CTCTTC	2 cut(s)	666, 859
Eco130I	CCWWGG	2 cut(s)	601, 898
Eco147I	AGGCCT	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	968
Eco72I	CACGTG	1 cut(s)	1007
Eco88I	CYCGRG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	968
EcoT14I	CCWWGG	2 cut(s)	601, 898
EcoT22I	ATGCAT	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	601, 898
FaeI	CATG	5 cut(s)	163, 328, 625, 656, 902
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	5 cut(s)	159, 324, 621, 652, 898
Fnu4HI	GCNGC	4 cut(s)	510, 745, 789, 1036
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	510, 745, 789, 1036
GlaI	GCGC	1 cut(s)	1030
GluI	GCNGC	4 cut(s)	510, 745, 789, 1036
HaeII	RGCGCY	1 cut(s)	1032
HaeIII	GGCC	4 cut(s)	66, 474, 522, 873
HapII	CCGG	3 cut(s)	458, 828, 858
HgaI	GACGC	1 cut(s)	833
HhaI	GCGC	1 cut(s)	1031
Hin1I	GRCGYC	1 cut(s)	825
Hin1II	CATG	5 cut(s)	163, 328, 625, 656, 902
Hin6I	GCGC	1 cut(s)	1029
HinP1I	GCGC	1 cut(s)	1029
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	4 cut(s)	657, 889, 983, 1010
HpaII	CCGG	3 cut(s)	458, 828, 858
HphI	GGTGA	5 cut(s)	44, 116, 652, 935, 992
Hpy166II	GTNNAC	2 cut(s)	342, 577
Hpy188I	TCNGA	6 cut(s)	93, 239, 562, 694, 917, 998
Hpy188III	TCNNGA	4 cut(s)	86, 527, 668, 1071
Hpy8I	GTNNAC	2 cut(s)	342, 577
HpyAV	CCTTC	5 cut(s)	157, 403, 512, 533, 1019
HpyCH4III	ACNGT	3 cut(s)	427, 581, 757
HpyCH4IV	ACGT	3 cut(s)	255, 585, 1006
HpyCH4V	TGCA	8 cut(s)	122, 320, 503, 609, 632, 705, 818, 844
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 500, 509, 794, 824, 1035
HpyF3I	CTNAG	3 cut(s)	92, 114, 334
HpySE526I	ACGT	3 cut(s)	255, 585, 1006
Hsp92I	GRCGYC	1 cut(s)	825
Hsp92II	CATG	5 cut(s)	163, 328, 625, 656, 902
HspAI	GCGC	1 cut(s)	1029
Kzo9I	GATC	3 cut(s)	88, 466, 689
LmnI	GCTCC	1 cut(s)	447
Lsp1109I	GCAGC	1 cut(s)	775
MaeII	ACGT	3 cut(s)	255, 585, 1006
MaeIII	GTNAC	5 cut(s)	451, 552, 581, 904, 935
MalI	GATC	3 cut(s)	90, 468, 691
MboI	GATC	3 cut(s)	88, 466, 689
MboII	GAAGA	6 cut(s)	213, 418, 683, 846, 856, 938
MfeI	CAATTG	1 cut(s)	819
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	3 cut(s)	240, 314, 819
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	651, 898
MmeI	TCCRAC	2 cut(s)	276, 895
MnlI	CCTC	3 cut(s)	73, 162, 211
Mox20I	TGGCCA	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	1 cut(s)	1065
MslI	CAYNNNNRTG	1 cut(s)	1043
Msp20I	TGGCCA	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	3 cut(s)	458, 828, 858
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	2 cut(s)	124, 494
MwoI	GCNNNNNNNGC	6 cut(s)	119, 500, 509, 794, 824, 1035
NcoI	CCATGG	1 cut(s)	898
NdeII	GATC	3 cut(s)	88, 466, 689
NlaIII	CATG	5 cut(s)	163, 328, 625, 656, 902
NlaIV	GGNNCC	3 cut(s)	599, 700, 969
NmuCI	GTSAC	3 cut(s)	552, 581, 904
NsiI	ATGCAT	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	666
PaqCI	CACCTGC	1 cut(s)	710
PceI	AGGCCT	1 cut(s)	522
PctI	GAATGC	2 cut(s)	124, 494
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	2 cut(s)	983, 1010
PkrI	GCNGC	4 cut(s)	511, 746, 790, 1037
PleI	GAGTC	2 cut(s)	651, 897
PmaCI	CACGTG	1 cut(s)	1007
PmlI	CACGTG	1 cut(s)	1007
PpsI	GAGTC	2 cut(s)	651, 897
Ppu21I	YACGTR	1 cut(s)	1007
PpuMI	RGGWCCY	1 cut(s)	968
PshAI	GACNNNNGTC	1 cut(s)	911
Psp1406I	AACGTT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	968
PspCI	CACGTG	1 cut(s)	1007
PspN4I	GGNNCC	3 cut(s)	599, 700, 969
PspPI	GGNCC	1 cut(s)	968
PspPPI	RGGWCCY	1 cut(s)	968
PstI	CTGCAG	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	761
RsaI	GTAC	3 cut(s)	173, 759, 944
RsaNI	GTAC	3 cut(s)	172, 758, 943
RseI	CAYNNNNRTG	1 cut(s)	1043
SaqAI	TTAA	1 cut(s)	1065
SatI	GCNGC	4 cut(s)	510, 745, 789, 1036
Sau3AI	GATC	3 cut(s)	88, 466, 689
Sau96I	GGNCC	1 cut(s)	968
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	2 cut(s)	651, 898
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	666
SgrAI	CRCCGGYG	1 cut(s)	827
SinI	GGWCC	1 cut(s)	968
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	1043
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	3 cut(s)	240, 314, 819
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	4 cut(s)	510, 744, 791, 1035
StuI	AGGCCT	1 cut(s)	522
StyI	CCWWGG	2 cut(s)	601, 898
TaaI	ACNGT	3 cut(s)	427, 581, 757
TaiI	ACGT	3 cut(s)	258, 588, 1009
TaqI	TCGA	2 cut(s)	667, 1072
TaqII	GACCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	240, 314, 819
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	3 cut(s)	512, 747, 1038
TfiI	GAWTC	2 cut(s)	983, 1010
Tru1I	TTAA	1 cut(s)	1065
Tru9I	TTAA	1 cut(s)	1065
TscAI	CASTG	2 cut(s)	310, 874
TseFI	GTSAC	3 cut(s)	552, 581, 904
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	3 cut(s)	552, 581, 904
TspDTI	ATGAA	4 cut(s)	62, 176, 262, 765
TspRI	CASTG	2 cut(s)	310, 874
VpaK11BI	GGWCC	1 cut(s)	968
XapI	RAATTY	2 cut(s)	240, 314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	944
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.