Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Forward (+)

11590104 .. 11591982

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G125700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGACATCTATGGTGTTGACGCGTGCTAGCTTAACATTTTTAATGGTTTGGATTTTCTGTATATCATCTACAGCATGTTCCGAAACGTACAAGCCTCTAAGGACAGACCCGAAAGCTATGAAGGAGAGGTACGAAAGGTGGCTGCAAAAATATGGCCGGATATATAAAAATAGAGAGGAAGCGGCATACCGTTTTGGGGTTTACAAATCCAACATCGAGTTTGTTGATTTCGTAAATTCTCAAAATCTATCATACAAACTCACTGACAACAAATTTGCAGATATCACAAACTTAGAGTTTACAAAAACCTTCATGGGTTTCCAAACTAGGAGTCATCCAAAAACGAAGTTCAGTTATGACAAGGATGAGGAACTTCCGACTGCAGTGGATTGGAGAAAGCATGGTGCAGTAACTCCAATCAAGAATCAAGGCCAATGTGGAAGTTGTTGGGCATTTTCTGCAGTAGCAGCTGTGGAAGGCATTAACCAAATCAAAACTGGAAAATTGGTGTCACTATCAGAACAAGAGCTTGTGGACTGCGATGTCAAAACTGGGAATGAAGGCTGCAATGGTGGATACATGGAAAAAGCGTTTAGTTTCATAAAAGATAACGGACTCTCCACTGAAAAGGATTATCCTTACAAAGGATCAGATGGCATATGTGATGAAGATAGTTTGAAAAACAGTGCTGTGAACATAAGTGGCTATGAAAGCATACCTGCCAATAGTGAGAAAAGCCTCCAAGCAGCAGTTGCACACCAACCTGTCTCTGTTGCAGTTGACGCTGCCGGTTATGCTTTTCAATTCTATTCTTCAGGTACCTTCACTGGCCAATGTGGAAAGAATCTCAACCACGGGGTCACAGCAGTCGGCTATGGGGAAGATAGTGGTAAAAAGTACTGGATTGTAAAGAATTCTTGGGGTCCTGACTGGGGTGAATCTGGTTATATAAGAATGACACGTGATTCGGTTGATAAGAAAGGTACCTGCGGCATTGCCATGCAGGCTAGCTACCCTGTTAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

344

Amino Acids

38.15

Weight (kDa)

7.47

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
Acc36I	ACCTGC	2 cut(s)	730, 998
Acc65I	GGTACC	2 cut(s)	821, 986
AccB1I	GGYRCC	2 cut(s)	821, 986
AccII	CGCG	1 cut(s)	25
AciI	CCGC	2 cut(s)	185, 993
AclWI	GGATC	1 cut(s)	658
AcoI	YGGCCR	2 cut(s)	157, 832
AcsI	RAATTY	3 cut(s)	238, 275, 916
AcuI	CTGAAG	1 cut(s)	801
AcvI	CACGTG	1 cut(s)	965
AfaI	GTAC	5 cut(s)	92, 134, 823, 902, 988
AfiI	CCNNNNNNNGG	5 cut(s)	199, 647, 935, 1024, 1025
AflIII	ACRYGT	2 cut(s)	23, 962
AgsI	TTSAA	2 cut(s)	682, 806
AluBI	AGCT	5 cut(s)	33, 119, 473, 532, 1014
AluI	AGCT	5 cut(s)	33, 119, 473, 532, 1014
Alw26I	GTCTC	1 cut(s)	775
AlwI	GGATC	1 cut(s)	658
AoxI	GGCC	3 cut(s)	157, 433, 832
ApeKI	GCWGC	5 cut(s)	145, 470, 567, 749, 788
ApoI	RAATTY	3 cut(s)	238, 275, 916
ArsI	GACNNNNNNTTYG	6 cut(s)	260, 292, 319, 351, 952, 984
Asp718I	GGTACC	2 cut(s)	821, 986
AspS9I	GGNCC	1 cut(s)	926
AsuHPI	GGTGA	1 cut(s)	950
AsuNHI	GCTAGC	2 cut(s)	29, 1010
AvaII	GGWCC	1 cut(s)	926
BalI	TGGCCA	1 cut(s)	834
BanI	GGYRCC	2 cut(s)	821, 986
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbrPI	CACGTG	1 cut(s)	965
BbvI	GCAGC	5 cut(s)	132, 482, 554, 761, 775
BccI	CCATC	1 cut(s)	650
BciVI	GTATCC	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	775
BfaI	CTAG	3 cut(s)	30, 330, 1011
BfmI	CTRYAG	3 cut(s)	72, 384, 462
BfuAI	ACCTGC	2 cut(s)	730, 998
BfuI	GTATCC	1 cut(s)	572
BglI	GCCNNNNNGGC	1 cut(s)	1007
BisI	GCNGC	7 cut(s)	146, 186, 471, 568, 750, 789, 994
BlsI	GCNGC	7 cut(s)	147, 187, 472, 569, 751, 790, 995
BmcAI	AGTACT	1 cut(s)	902
Bme18I	GGWCC	1 cut(s)	926
BmgT120I	GGNCC	1 cut(s)	926
BmiI	GGNNCC	3 cut(s)	823, 927, 988
BmrI	ACTGGG	2 cut(s)	564, 943
BmtI	GCTAGC	2 cut(s)	33, 1014
BmuI	ACTGGG	2 cut(s)	564, 943
BsaAI	YACGTR	1 cut(s)	965
BsaJI	CCNNGG	1 cut(s)	856
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 647, 935, 1024, 1025
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	5 cut(s)	505, 559, 835, 908, 938
Bse3DI	GCAATG	2 cut(s)	577, 996
BseDI	CCNNGG	1 cut(s)	856
BseGI	GGATG	2 cut(s)	337, 373
BseLI	CCNNNNNNNGG	5 cut(s)	199, 647, 935, 1024, 1025
BseMI	GCAATG	2 cut(s)	577, 996
BseNI	ACTGG	5 cut(s)	505, 559, 835, 908, 938
BseXI	GCAGC	5 cut(s)	132, 482, 554, 761, 775
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	159, 435, 834
BshNI	GGYRCC	2 cut(s)	821, 986
BsiSI	CCGG	2 cut(s)	160, 792
BslI	CCNNNNNNNGG	5 cut(s)	199, 647, 935, 1024, 1025
BsmAI	GTCTC	1 cut(s)	775
BsnI	GGCC	3 cut(s)	159, 435, 834
Bsp143I	GATC	1 cut(s)	650
BspACI	CCGC	2 cut(s)	185, 993
BspANI	GGCC	3 cut(s)	159, 435, 834
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	823, 927, 988
BspMAI	CTGCAG	2 cut(s)	388, 466
BspMI	ACCTGC	2 cut(s)	730, 998
BspOI	GCTAGC	2 cut(s)	33, 1014
BspPI	GGATC	1 cut(s)	658
BspT107I	GGYRCC	2 cut(s)	821, 986
BsrDI	GCAATG	2 cut(s)	577, 996
BsrFI	RCCGGY	1 cut(s)	791
BsrI	ACTGG	5 cut(s)	505, 559, 835, 908, 938
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	1 cut(s)	856
BssMI	GATC	1 cut(s)	650
Bst4CI	ACNGT	2 cut(s)	194, 689
BstAPI	GCANNNNNTGC	2 cut(s)	461, 755
BstBAI	YACGTR	1 cut(s)	965
BstC8I	GCNNGC	4 cut(s)	27, 31, 1008, 1012
BstDEI	CTNAG	2 cut(s)	101, 295
BstDSI	CCRYGG	1 cut(s)	856
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	337, 373
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	653
BstMAI	GTCTC	1 cut(s)	775
BstMBI	GATC	1 cut(s)	650
BstMWI	GCNNNNNNNGC	7 cut(s)	461, 470, 714, 755, 785, 797, 1007
BstNSI	RCATGY	1 cut(s)	81
BstSFI	CTRYAG	3 cut(s)	72, 384, 462
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	5 cut(s)	132, 482, 554, 761, 775
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	3 cut(s)	159, 435, 834
BtgI	CCRYGG	1 cut(s)	856
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	337, 373
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	5 cut(s)	264, 393, 624, 694, 828
BveI	ACCTGC	2 cut(s)	730, 998
Cac8I	GCNNGC	4 cut(s)	27, 31, 1008, 1012
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	926
CseI	GACGC	2 cut(s)	31, 794
Csp6I	GTAC	5 cut(s)	91, 133, 822, 901, 987
CviAII	CATG	5 cut(s)	78, 316, 404, 583, 1003
CviQI	GTAC	5 cut(s)	91, 133, 822, 901, 987
DdeI	CTNAG	2 cut(s)	101, 295
DpnI	GATC	1 cut(s)	652
DpnII	GATC	1 cut(s)	650
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	2 cut(s)	157, 832
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	801
Eco72I	CACGTG	1 cut(s)	965
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	926
EcoRI	GAATTC	1 cut(s)	916
EcoRV	GATATC	1 cut(s)	286
FaeI	CATG	5 cut(s)	81, 319, 407, 586, 1006
FatI	CATG	5 cut(s)	77, 315, 403, 582, 1002
FauNDI	CATATG	1 cut(s)	662
Fnu4HI	GCNGC	7 cut(s)	146, 186, 471, 568, 750, 789, 994
FokI	GGATG	2 cut(s)	324, 380
Fsp4HI	GCNGC	7 cut(s)	146, 186, 471, 568, 750, 789, 994
FspBI	CTAG	3 cut(s)	30, 330, 1011
GluI	GCNGC	7 cut(s)	146, 186, 471, 568, 750, 789, 994
HaeIII	GGCC	3 cut(s)	159, 435, 834
HapII	CCGG	2 cut(s)	160, 792
HgaI	GACGC	2 cut(s)	31, 794
Hin1II	CATG	5 cut(s)	81, 319, 407, 586, 1006
HincII	GTYRAC	2 cut(s)	21, 784
HindII	GTYRAC	2 cut(s)	21, 784
HinfI	GANTC	6 cut(s)	334, 427, 618, 847, 941, 968
HpaII	CCGG	2 cut(s)	160, 792
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	6 cut(s)	21, 205, 303, 538, 697, 784
Hpy188I	TCNGA	4 cut(s)	85, 381, 523, 655
Hpy188III	TCNNGA	2 cut(s)	424, 929
Hpy8I	GTNNAC	6 cut(s)	21, 205, 303, 538, 697, 784
HpyAV	CCTTC	5 cut(s)	118, 322, 473, 557, 835
HpyCH4III	ACNGT	2 cut(s)	194, 689
HpyCH4IV	ACGT	2 cut(s)	89, 964
HpyCH4V	TGCA	9 cut(s)	148, 281, 386, 410, 464, 570, 758, 779, 1006
HpyF10VI	GCNNNNNNNGC	7 cut(s)	461, 470, 714, 755, 785, 797, 1007
HpyF3I	CTNAG	2 cut(s)	101, 295
HpySE526I	ACGT	2 cut(s)	89, 964
Hsp92II	CATG	5 cut(s)	81, 319, 407, 586, 1006
KpnI	GGTACC	2 cut(s)	825, 990
Kzo9I	GATC	1 cut(s)	650
Lsp1109I	GCAGC	5 cut(s)	132, 482, 554, 761, 775
MaeI	CTAG	3 cut(s)	30, 330, 1011
MaeII	ACGT	2 cut(s)	89, 964
MaeIII	GTNAC	3 cut(s)	412, 513, 862
MalI	GATC	1 cut(s)	652
MboI	GATC	1 cut(s)	650
MboII	GAAGA	3 cut(s)	683, 807, 896
MlsI	TGGCCA	1 cut(s)	834
MluCI	AATT	5 cut(s)	238, 275, 506, 806, 916
MluI	ACGCGT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	834
MlyI	GAGTC	2 cut(s)	343, 612
MmeI	TCCRAC	2 cut(s)	237, 404
MnlI	CCTC	5 cut(s)	108, 123, 172, 364, 752
Mox20I	TGGCCA	1 cut(s)	834
MscI	TGGCCA	1 cut(s)	834
MseI	TTAA	4 cut(s)	35, 44, 486, 1023
MslI	CAYNNNNRTG	1 cut(s)	1001
Msp20I	TGGCCA	1 cut(s)	834
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	160, 792
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	7 cut(s)	461, 470, 714, 755, 785, 797, 1007
NdeI	CATATG	1 cut(s)	662
NdeII	GATC	1 cut(s)	650
NheI	GCTAGC	2 cut(s)	29, 1010
NlaIII	CATG	5 cut(s)	81, 319, 407, 586, 1006
NlaIV	GGNNCC	3 cut(s)	823, 927, 988
NmuCI	GTSAC	2 cut(s)	513, 862
NspI	RCATGY	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	427, 847, 941, 968
PkrI	GCNGC	7 cut(s)	147, 187, 472, 569, 751, 790, 995
PleI	GAGTC	2 cut(s)	342, 612
PmaCI	CACGTG	1 cut(s)	965
PmlI	CACGTG	1 cut(s)	965
PpsI	GAGTC	2 cut(s)	342, 612
Ppu21I	YACGTR	1 cut(s)	965
PpuMI	RGGWCCY	1 cut(s)	926
Psp5II	RGGWCCY	1 cut(s)	926
PspCI	CACGTG	1 cut(s)	965
PspN4I	GGNNCC	3 cut(s)	823, 927, 988
PspPI	GGNCC	1 cut(s)	926
PspPPI	RGGWCCY	1 cut(s)	926
PstI	CTGCAG	2 cut(s)	388, 466
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	5 cut(s)	92, 134, 823, 902, 988
RsaNI	GTAC	5 cut(s)	91, 133, 822, 901, 987
RseI	CAYNNNNRTG	1 cut(s)	1001
SaqAI	TTAA	4 cut(s)	35, 44, 486, 1023
SatI	GCNGC	7 cut(s)	146, 186, 471, 568, 750, 789, 994
Sau3AI	GATC	1 cut(s)	650
Sau96I	GGNCC	1 cut(s)	926
ScaI	AGTACT	1 cut(s)	902
SchI	GAGTC	2 cut(s)	343, 612
SfcI	CTRYAG	3 cut(s)	72, 384, 462
SinI	GGWCC	1 cut(s)	926
SmiMI	CAYNNNNRTG	1 cut(s)	1001
Sse9I	AATT	5 cut(s)	238, 275, 506, 806, 916
SsiI	CCGC	2 cut(s)	185, 993
SspMI	CTAG	3 cut(s)	30, 330, 1011
TaaI	ACNGT	2 cut(s)	194, 689
TaiI	ACGT	2 cut(s)	92, 967
TaqI	TCGA	1 cut(s)	219
TasI	AATT	5 cut(s)	238, 275, 506, 806, 916
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	2 cut(s)	188, 996
TfiI	GAWTC	4 cut(s)	427, 847, 941, 968
Tru1I	TTAA	4 cut(s)	35, 44, 486, 1023
Tru9I	TTAA	4 cut(s)	35, 44, 486, 1023
TscAI	CASTG	5 cut(s)	271, 393, 631, 694, 835
TseFI	GTSAC	2 cut(s)	513, 862
TseI	GCWGC	5 cut(s)	145, 470, 567, 749, 788
Tsp45I	GTSAC	2 cut(s)	513, 862
TspDTI	ATGAA	6 cut(s)	137, 304, 576, 592, 684, 726
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	5 cut(s)	271, 393, 631, 694, 835
VpaK11BI	GGWCC	1 cut(s)	926
XagI	CCTNNNNNAGG	1 cut(s)	645
XapI	RAATTY	3 cut(s)	238, 275, 916
XceI	RCATGY	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XspI	CTAG	3 cut(s)	30, 330, 1011
ZrmI	AGTACT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.