Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Forward (+)

22551913 .. 22554092

Gene Structure 2180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0165300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATGAAGAAGTTGAGAGAACTAAGTACTCTTTGTGGAATTGAAGCATGTGCAATAGTTTACAGCCCATTTGATTTTGAACCCGAGGTTTGGCCTTCTTCTTATGCGGTTGAAAATGCTCTGAAAAAGTTAAAGGATATGCCTGCGATAGAGAAGAGTAGGAAGATGCTGAGCCAAGAAAGCTATCTGAAGGGGATGATCTCTAAAGCATACGCAAAGTTAAAGAGAGTGAGGAGGGAAAATCATGAGAAGGAATTGAGAGTTGTCATGTTCCAAAGTCTCACCAAAGGAATTCCTCAATTCCAGAATCTGAACCTGATGGATATGGATGATCTTGGCCGGCTTATCAACCAAAAATTGAATGAGATTGATAACAGAAAAAAGAGTCTCAGTGAGGAGGTGACCGAAAGGGGAGAGGGAGGGGCACTTGGAGCAGGAGACGAGGTTGGGAGTGGTCTTGTTCTTGGACTATTCTTTGCCGCCATTGGAGGAGCCAGAGACCTTGGTTGGGCGAACCGCAGCCTTGACGGGTCTGGGTTAGCCAAAGGAGAGCAGCACGAATTTGGGGTTGCCCGAGGCGCAAGGCGTGCAGAGGAATGGGGAGGGGGAGGCAGTCAGAGTGGGAGAGGGAGGGGCACTTGGAGCAGGAGACGAGGTTGGGAGGGGTGGAGGCGGAAGACGGAGGAGGTGCAGAGACGCCGGAGGGTGGCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

238

Amino Acids

26.76

Weight (kDa)

9.85

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	1 - 23	9.3e-07	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	107, 480, 517, 673
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	291, 560
AcuI	CTGAAG	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	3 cut(s)	90, 508, 706
AgsI	TTSAA	4 cut(s)	44, 80, 113, 361
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw26I	GTCTC	6 cut(s)	284, 392, 432, 492, 643, 688
AlwNI	CAGNNNCTG	1 cut(s)	310
Ama87I	CYCGRG	2 cut(s)	83, 573
AoxI	GGCC	2 cut(s)	92, 337
ApeKI	GCWGC	2 cut(s)	519, 553
ApoI	RAATTY	2 cut(s)	291, 560
AspLEI	GCGC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	274, 412
AvaI	CYCGRG	2 cut(s)	83, 573
BaeGI	GKGCMC	2 cut(s)	427, 638
BbsI	GAAGAC	1 cut(s)	683
BbvI	GCAGC	2 cut(s)	531, 565
BccI	CCATC	1 cut(s)	313
BcoDI	GTCTC	6 cut(s)	284, 392, 432, 492, 643, 688
BisI	GCNGC	3 cut(s)	480, 520, 554
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	481, 521, 555
BmcAI	AGTACT	1 cut(s)	28
BmeT110I	CYCGRG	2 cut(s)	83, 573
BmiI	GGNNCC	1 cut(s)	493
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	683
BplI	GAGNNNNNCTC	1 cut(s)	694
Bpu1102I	GCTNAGC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	84, 502, 574
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 640, 670
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 508, 706
Bse118I	RCCGGY	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	84, 502, 574
BseGI	GGATG	2 cut(s)	201, 334
BseLI	CCNNNNNNNGG	3 cut(s)	90, 508, 706
BseMII	CTCAG	2 cut(s)	161, 403
BseRI	GAGGAG	4 cut(s)	247, 410, 504, 698
BseSI	GKGCMC	2 cut(s)	427, 638
BseXI	GCAGC	2 cut(s)	531, 565
BsgI	GTGCAG	2 cut(s)	609, 710
BshFI	GGCC	2 cut(s)	94, 339
BsiHKCI	CYCGRG	2 cut(s)	83, 573
BsiSI	CCGG	2 cut(s)	340, 700
BslI	CCNNNNNNNGG	3 cut(s)	90, 508, 706
BsmAI	GTCTC	6 cut(s)	284, 392, 432, 492, 643, 688
BsmBI	CGTCTC	3 cut(s)	432, 643, 688
BsnI	GGCC	2 cut(s)	94, 339
Bso31I	GGTCTC	1 cut(s)	492
BsoBI	CYCGRG	2 cut(s)	83, 573
Bsp1286I	GDGCHC	2 cut(s)	427, 638
Bsp143I	GATC	2 cut(s)	198, 331
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	4 cut(s)	107, 480, 517, 673
BspANI	GGCC	2 cut(s)	94, 339
BspCNI	CTCAG	2 cut(s)	162, 402
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	339
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	3 cut(s)	84, 502, 574
BssMI	GATC	2 cut(s)	198, 331
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	697
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	144, 341, 588
BstDEI	CTNAG	3 cut(s)	23, 170, 389
BstEII	GGTNACC	1 cut(s)	400
BstF5I	GGATG	2 cut(s)	201, 334
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	2 cut(s)	201, 334
BstMAI	GTCTC	6 cut(s)	284, 392, 432, 492, 643, 688
BstMBI	GATC	2 cut(s)	198, 331
BstMWI	GCNNNNNNNGC	5 cut(s)	180, 431, 578, 587, 642
BstNSI	RCATGY	1 cut(s)	51
BstPI	GGTNACC	1 cut(s)	400
BstSLI	GKGCMC	2 cut(s)	427, 638
BstV1I	GCAGC	2 cut(s)	531, 565
BstV2I	GAAGAC	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	94, 339
BtsCI	GGATG	2 cut(s)	201, 334
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	3 cut(s)	144, 341, 588
CaiI	CAGNNNCTG	1 cut(s)	310
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	339
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	3 cut(s)	48, 245, 268
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	3 cut(s)	23, 170, 389
DpnI	GATC	2 cut(s)	200, 333
DpnII	GATC	2 cut(s)	198, 331
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	688
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	209
Eco88I	CYCGRG	2 cut(s)	83, 573
Eco91I	GGTNACC	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
Esp3I	CGTCTC	3 cut(s)	432, 643, 688
FaeI	CATG	3 cut(s)	51, 248, 271
FaiI	YATR	7 cut(s)	49, 105, 140, 211, 246, 269, 326
FatI	CATG	3 cut(s)	47, 244, 267
Fnu4HI	GCNGC	3 cut(s)	480, 520, 554
FokI	GGATG	2 cut(s)	208, 341
Fsp4HI	GCNGC	3 cut(s)	480, 520, 554
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	3 cut(s)	480, 520, 554
HaeIII	GGCC	2 cut(s)	94, 339
HapII	CCGG	2 cut(s)	340, 700
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	1 cut(s)	581
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	3 cut(s)	51, 248, 271
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HinfI	GANTC	2 cut(s)	307, 385
HpaII	CCGG	2 cut(s)	340, 700
HphI	GGTGA	2 cut(s)	274, 412
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	4 cut(s)	123, 189, 312, 618
Hpy188III	TCNNGA	2 cut(s)	245, 304
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	105, 184, 244
HpyCH4V	TGCA	3 cut(s)	53, 590, 691
HpyF10VI	GCNNNNNNNGC	5 cut(s)	180, 431, 578, 587, 642
HpyF3I	CTNAG	3 cut(s)	23, 170, 389
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	3 cut(s)	51, 248, 271
HspAI	GCGC	1 cut(s)	579
KroI	GCCGGC	1 cut(s)	339
KroNI	GCCGGC	1 cut(s)	341
Kzo9I	GATC	2 cut(s)	198, 331
LmnI	GCTCC	3 cut(s)	431, 491, 642
LpnPI	CCDG	9 cut(s)	156, 317, 329, 353, 420, 508, 519, 631, 713
Lsp1109I	GCAGC	2 cut(s)	531, 565
LweI	GCATC	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	200, 333
MboI	GATC	2 cut(s)	198, 331
MboII	GAAGA	5 cut(s)	19, 90, 166, 175, 688
MhlI	GDGCHC	2 cut(s)	427, 638
MluCI	AATT	6 cut(s)	39, 254, 291, 299, 356, 560
MlyI	GAGTC	1 cut(s)	394
MroNI	GCCGGC	1 cut(s)	339
MseI	TTAA	2 cut(s)	131, 221
MspI	CCGG	2 cut(s)	340, 700
MwoI	GCNNNNNNNGC	5 cut(s)	180, 431, 578, 587, 642
NaeI	GCCGGC	1 cut(s)	341
NdeII	GATC	2 cut(s)	198, 331
NgoMIV	GCCGGC	1 cut(s)	339
NlaIII	CATG	3 cut(s)	51, 248, 271
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	51
PagI	TCATGA	1 cut(s)	244
PdiI	GCCGGC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	481, 521, 555
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PspEI	GGTNACC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	131, 221
SatI	GCNGC	3 cut(s)	480, 520, 554
Sau3AI	GATC	2 cut(s)	198, 331
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	427, 638
SetI	ASST	8 cut(s)	90, 185, 318, 402, 447, 504, 658, 690
SfaNI	GCATC	1 cut(s)	156
Sse9I	AATT	6 cut(s)	39, 254, 291, 299, 356, 560
SsiI	CCGC	4 cut(s)	107, 480, 517, 673
StyI	CCWWGG	1 cut(s)	502
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	6 cut(s)	39, 254, 291, 299, 356, 560
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	131, 221
Tru9I	TTAA	2 cut(s)	131, 221
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	2 cut(s)	519, 553
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	695
TspRI	CASTG	1 cut(s)	397
XapI	RAATTY	2 cut(s)	291, 560
XceI	RCATGY	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.