Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Forward (+)

36657376 .. 36659034

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG167300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGACATCTATAATGCTAAGGTGTGCCAGTTTTATGTTGTTTATGGTCTGGACGCTGTGCATATCATCGTCTCTGGCATGTACTGAAAAGCAGAAGCCGATAGGGTATGAGCAAAAATCCATGAAGGAGAGGTACGAAAGGTGGCTGACAAAATTCGACCGCAGATACAAGAATAGAGAGGAGTGGGAATATCGTTTCGGAATTTTCCAGTCCAACGTTCAGCTTGTTGATTTTATAAACTCTCAAAACCTGTCATACAAACTCACTGACAACAAATTTGCAGACATGACAAACTTAGAGTTTACAAGAACCCACTTGGGTTTCCAAGCTGGTAGAAATCCAAAGACGAAGTTCAGGTATGAGTGGCAGAAGGACTTGCCGACTACAGTGGATTGGAGAAAGAATGGGAGCGTAACTCCTGTCAGGGATCAAGGCCGATGTGGTAGTTGTTGGGCATTCTCTGCAGTTGCCGCTGTGGAAGGCCTTCATGAAATCAATACTGGAAAATTGGTGTCACTGTCGGAACAAGAGCTTGTGGACTGTGACGTAAATACTGGGAACCAAGGTTGCAGTGGTGGATACATGGAAAATGCATTTGATTACATAAGAAAGCATGGACTCACCACTCAAGAAGATTATCCATACACAGGATCAGATGGCACCTGCAATAAAGCTAAACAGAAAAAATATGCTGTGAAAATAGGCGGCTATGAAACAGTACCTGATAATGATGAAAAAAGCTTACAAGCTGCAGTTGCTCATCAACCTGTCTCGGTTGCAATTGACGCGGGTGGTTTTGCTATGCAACTCTACTCTTCCGGTATCTTCACTGGCCTGCTATGTGGTAAGAGTCTCAACCATGGAGTGACAGCAGTCGGATATGGTGAAGAAAATGGTAACAAGTACTGGATTGTGAAAAACTCTTGGGGTCCTAACTGGGGTGAATCTGGTTATATCAGAATGACACGTGATTCTATTGATAAGGAAGGCGCTTGCGGCATTGCTATGATGTCAAGCTACCCTGTTAAGTCTCGAAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

348

Amino Acids

39.33

Weight (kDa)

8.4

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	46 - 102	4.4e-14	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	127 - 343	7e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AarI	CACCTGC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	662
AccII	CGCG	1 cut(s)	791
AciI	CCGC	5 cut(s)	163, 474, 708, 791, 999
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	2 cut(s)	438, 661
AcsI	RAATTY	3 cut(s)	155, 204, 278
AcvI	CACGTG	1 cut(s)	971
AfaI	GTAC	4 cut(s)	85, 137, 723, 908
AfiI	CCNNNNNNNGG	2 cut(s)	650, 941
AflIII	ACRYGT	1 cut(s)	968
AluBI	AGCT	7 cut(s)	226, 332, 535, 677, 744, 752, 1020
AluI	AGCT	7 cut(s)	226, 332, 535, 677, 744, 752, 1020
Alw26I	GTCTC	4 cut(s)	78, 778, 860, 1038
AlwI	GGATC	2 cut(s)	438, 661
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	436, 484, 835
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	3 cut(s)	155, 204, 278
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	995
AspS9I	GGNCC	1 cut(s)	932
AsuHPI	GGTGA	3 cut(s)	616, 899, 956
AvaII	GGWCC	1 cut(s)	932
BanI	GGYRCC	1 cut(s)	662
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbrPI	CACGTG	1 cut(s)	971
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	1 cut(s)	653
BciVI	GTATCC	1 cut(s)	575
BcoDI	GTCTC	4 cut(s)	78, 778, 860, 1038
BfmI	CTRYAG	3 cut(s)	387, 465, 753
BfoI	RGCGCY	1 cut(s)	996
BfuAI	ACCTGC	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	4 cut(s)	474, 709, 753, 1000
BlsI	GCNGC	4 cut(s)	475, 710, 754, 1001
BmcAI	AGTACT	1 cut(s)	908
Bme18I	GGWCC	1 cut(s)	932
BmgT120I	GGNCC	1 cut(s)	932
BmiI	GGNNCC	3 cut(s)	563, 664, 933
BmrI	ACTGGG	2 cut(s)	567, 949
BmuI	ACTGGG	2 cut(s)	567, 949
BoxI	GACNNNNGTC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	403, 435
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	615
BsaAI	YACGTR	1 cut(s)	971
BsaJI	CCNNGG	2 cut(s)	565, 862
BsaWI	WCCGGW	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 941
Bse1I	ACTGG	7 cut(s)	30, 211, 508, 562, 838, 914, 944
Bse3DI	GCAATG	1 cut(s)	1002
BseDI	CCNNGG	2 cut(s)	565, 862
BseLI	CCNNNNNNNGG	2 cut(s)	650, 941
BseMI	GCAATG	1 cut(s)	1002
BseNI	ACTGG	7 cut(s)	30, 211, 508, 562, 838, 914, 944
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	739
Bsh1236I	CGCG	1 cut(s)	791
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	438, 486, 837
BshNI	GGYRCC	1 cut(s)	662
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	822
BslI	CCNNNNNNNGG	2 cut(s)	650, 941
BsmAI	GTCTC	4 cut(s)	78, 778, 860, 1038
BsmBI	CGTCTC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	438, 486, 837
Bsp143I	GATC	2 cut(s)	430, 653
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	5 cut(s)	163, 474, 708, 791, 999
BspANI	GGCC	3 cut(s)	438, 486, 837
BspFNI	CGCG	1 cut(s)	791
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	3 cut(s)	563, 664, 933
BspMAI	CTGCAG	2 cut(s)	469, 757
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	2 cut(s)	438, 661
BspT107I	GGYRCC	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	1002
BsrI	ACTGG	7 cut(s)	30, 211, 508, 562, 838, 914, 944
BssECI	CCNNGG	2 cut(s)	565, 862
BssMI	GATC	2 cut(s)	430, 653
BssT1I	CCWWGG	2 cut(s)	565, 862
Bst4CI	ACNGT	4 cut(s)	391, 522, 545, 721
Bst6I	CTCTTC	1 cut(s)	823
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	839, 997
BstDEI	CTNAG	2 cut(s)	20, 298
BstDSI	CCRYGG	1 cut(s)	862
BstFNI	CGCG	1 cut(s)	791
BstH2I	RGCGCY	1 cut(s)	996
BstHHI	GCGC	1 cut(s)	995
BstKTI	GATC	2 cut(s)	433, 656
BstMAI	GTCTC	4 cut(s)	78, 778, 860, 1038
BstMBI	GATC	2 cut(s)	430, 653
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	5 cut(s)	464, 473, 758, 788, 999
BstNSI	RCATGY	1 cut(s)	84
BstPAI	GACNNNNGTC	1 cut(s)	875
BstSFI	CTRYAG	3 cut(s)	387, 465, 753
BstUI	CGCG	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	739
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	3 cut(s)	438, 486, 837
BtgI	CCRYGG	1 cut(s)	862
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	5 cut(s)	267, 396, 518, 580, 831
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	2 cut(s)	839, 997
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	995
Cfr13I	GGNCC	1 cut(s)	932
CseI	GACGC	2 cut(s)	64, 797
Csp6I	GTAC	4 cut(s)	84, 136, 722, 907
CviAII	CATG	7 cut(s)	81, 124, 289, 491, 586, 617, 863
CviQI	GTAC	4 cut(s)	84, 136, 722, 907
DdeI	CTNAG	2 cut(s)	20, 298
DpnI	GATC	2 cut(s)	432, 655
DpnII	GATC	2 cut(s)	430, 653
Eam1104I	CTCTTC	1 cut(s)	823
EarI	CTCTTC	1 cut(s)	823
Eco130I	CCWWGG	2 cut(s)	565, 862
Eco147I	AGGCCT	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	932
Eco72I	CACGTG	1 cut(s)	971
EcoO109I	RGGNCCY	1 cut(s)	932
EcoT14I	CCWWGG	2 cut(s)	565, 862
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	2 cut(s)	565, 862
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	7 cut(s)	84, 127, 292, 494, 589, 620, 866
FatI	CATG	7 cut(s)	80, 123, 288, 490, 585, 616, 862
FauI	CCCGC	1 cut(s)	784
Fnu4HI	GCNGC	4 cut(s)	474, 709, 753, 1000
Fsp4HI	GCNGC	4 cut(s)	474, 709, 753, 1000
GlaI	GCGC	1 cut(s)	994
GluI	GCNGC	4 cut(s)	474, 709, 753, 1000
HaeII	RGCGCY	1 cut(s)	996
HaeIII	GGCC	3 cut(s)	438, 486, 837
HapII	CCGG	1 cut(s)	822
HgaI	GACGC	2 cut(s)	64, 797
HhaI	GCGC	1 cut(s)	995
Hin1II	CATG	7 cut(s)	84, 127, 292, 494, 589, 620, 866
Hin6I	GCGC	1 cut(s)	993
HinP1I	GCGC	1 cut(s)	993
HindIII	AAGCTT	1 cut(s)	742
HinfI	GANTC	4 cut(s)	621, 853, 947, 974
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	3 cut(s)	616, 899, 956
Hpy166II	GTNNAC	2 cut(s)	306, 541
Hpy188I	TCNGA	5 cut(s)	203, 526, 658, 881, 962
Hpy188III	TCNNGA	4 cut(s)	52, 491, 632, 1035
Hpy8I	GTNNAC	2 cut(s)	306, 541
HpyAV	CCTTC	5 cut(s)	121, 367, 476, 497, 983
HpyCH4III	ACNGT	4 cut(s)	391, 522, 545, 721
HpyCH4IV	ACGT	3 cut(s)	219, 549, 970
HpyCH4V	TGCA	9 cut(s)	63, 284, 467, 573, 596, 669, 755, 782, 808
HpyF10VI	GCNNNNNNNGC	5 cut(s)	464, 473, 758, 788, 999
HpyF3I	CTNAG	2 cut(s)	20, 298
HpySE526I	ACGT	3 cut(s)	219, 549, 970
Hsp92II	CATG	7 cut(s)	84, 127, 292, 494, 589, 620, 866
HspAI	GCGC	1 cut(s)	993
Kzo9I	GATC	2 cut(s)	430, 653
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	739
MaeII	ACGT	3 cut(s)	219, 549, 970
MaeIII	GTNAC	5 cut(s)	415, 516, 545, 868, 899
MalI	GATC	2 cut(s)	432, 655
MboI	GATC	2 cut(s)	430, 653
MboII	GAAGA	4 cut(s)	647, 810, 820, 902
MfeI	CAATTG	1 cut(s)	783
MluCI	AATT	5 cut(s)	155, 204, 278, 509, 783
MlyI	GAGTC	2 cut(s)	615, 862
MmeI	TCCRAC	3 cut(s)	240, 504, 859
MnlI	CCTC	2 cut(s)	126, 175
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	1029
MslI	CAYNNNNRTG	1 cut(s)	1007
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	822
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	1 cut(s)	458
MvnI	CGCG	1 cut(s)	791
MwoI	GCNNNNNNNGC	5 cut(s)	464, 473, 758, 788, 999
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	2 cut(s)	430, 653
NlaIII	CATG	7 cut(s)	84, 127, 292, 494, 589, 620, 866
NlaIV	GGNNCC	3 cut(s)	563, 664, 933
NmuCI	GTSAC	3 cut(s)	516, 545, 868
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	84
PagI	TCATGA	1 cut(s)	490
PaqCI	CACCTGC	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	486
PctI	GAATGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	947, 974
PkrI	GCNGC	4 cut(s)	475, 710, 754, 1001
PleI	GAGTC	2 cut(s)	615, 861
PmaCI	CACGTG	1 cut(s)	971
PmlI	CACGTG	1 cut(s)	971
PpsI	GAGTC	2 cut(s)	615, 861
Ppu21I	YACGTR	1 cut(s)	971
PpuMI	RGGWCCY	1 cut(s)	932
PshAI	GACNNNNGTC	1 cut(s)	875
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	932
PspCI	CACGTG	1 cut(s)	971
PspN4I	GGNNCC	3 cut(s)	563, 664, 933
PspPI	GGNCC	1 cut(s)	932
PspPPI	RGGWCCY	1 cut(s)	932
PstI	CTGCAG	2 cut(s)	469, 757
PstNI	CAGNNNCTG	1 cut(s)	725
RsaI	GTAC	4 cut(s)	85, 137, 723, 908
RsaNI	GTAC	4 cut(s)	84, 136, 722, 907
RseI	CAYNNNNRTG	1 cut(s)	1007
SaqAI	TTAA	1 cut(s)	1029
SatI	GCNGC	4 cut(s)	474, 709, 753, 1000
Sau3AI	GATC	2 cut(s)	430, 653
Sau96I	GGNCC	1 cut(s)	932
ScaI	AGTACT	1 cut(s)	908
SchI	GAGTC	2 cut(s)	615, 862
SfcI	CTRYAG	3 cut(s)	387, 465, 753
SinI	GGWCC	1 cut(s)	932
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
Sse9I	AATT	5 cut(s)	155, 204, 278, 509, 783
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	5 cut(s)	163, 474, 708, 791, 999
StuI	AGGCCT	1 cut(s)	486
StyI	CCWWGG	2 cut(s)	565, 862
TaaI	ACNGT	4 cut(s)	391, 522, 545, 721
TaiI	ACGT	3 cut(s)	222, 552, 973
TaqI	TCGA	2 cut(s)	159, 1036
TasI	AATT	5 cut(s)	155, 204, 278, 509, 783
TatI	WGTACW	2 cut(s)	83, 906
TauI	GCSGC	3 cut(s)	476, 711, 1002
TfiI	GAWTC	2 cut(s)	947, 974
Tru1I	TTAA	1 cut(s)	1029
Tru9I	TTAA	1 cut(s)	1029
TscAI	CASTG	5 cut(s)	274, 396, 525, 580, 838
TseFI	GTSAC	3 cut(s)	516, 545, 868
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	3 cut(s)	516, 545, 868
TspDTI	ATGAA	5 cut(s)	140, 479, 507, 729, 750
TspRI	CASTG	5 cut(s)	274, 396, 525, 580, 838
VpaK11BI	GGWCC	1 cut(s)	932
XapI	RAATTY	3 cut(s)	155, 204, 278
XceI	RCATGY	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	908
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.