Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016627

Physical Location & Seq

Genomic Coordinates Reverse (-)

33292837 .. 33294037

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAGACATCTATAATGCTAAGGTGTGCCAGTTTTGTGTTGTTTATGGTCTGGACGCTGTGCATATCATCGTCTCTGGCATGTACTGAAAAGCAGAAGCCGATAGGGTATGAGCAAAAATCCATGAAGGAGAGGTACGAAAGGTGGCTGACAAAATACGACCGAAGATACAAGAATAGAGAGGAGTGGGAATATCGTTTCGGAATTTACCAGTCCAACGTTGAGCTTGTCGATTTTATAAACTCTCAAAACCTGTCATACAAACTCACCGACAACAAATTTGCAGACATGACAAACTTAGAGTTTACAAGAACCCACTTGGGTTTCCAAGCTGGTAGAAATCCAAAGACGAAGTTCAGGTATGAGTGGAAGAAGGACTTGCCGACTACAGTGGATTGGAGAAAGAACGGGAGCGTAACCCCGGTCAGGGATCAAGGCCGATGTGGTAGTTGTTGGGCATTCTCTGCAGTTGCTGCTGTGGAAGGCCTTCACGAAATCAATACTGGAAAACTGGTGTCACTCTCGGAACAAGAGCTTGTGGACTGTGACGCGGCTATGAAACAGTACCTGATAATGATGAAAAAAAGTTTACAAGCTGCAGTTGCTCATCAACCTGTCTCGGTTGCAATTGACGCCGGTGGTTTTGCTATGCAACTCTACTCTTCCGGTATCTTCACTGGCCTGCTATGTGGTAAGAGTCTCAACCATGGAGTGACAGCAGTCGGATATGGAGAACAAAATGGTAACAAGTACTGGATTGTGAAGAACTCTTGGGGTCCTAACTGGGGTGAATCTGGTTATATCAGAATGACACGTGATTCTATTGATAAGGAAGGCGCTTGCGGCATTGCTATGATGTCAAGCTACCCTGTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

292

Amino Acids

33.23

Weight (kDa)

8.88

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	46 - 102	1.2e-13	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	127 - 184	4.6e-24	Papain family cysteine protease
Peptidase_C1	PF00112	194 - 291	9.8e-33	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06260
fragaria_vesca	FvH4_7g08420
malus_domestica	MD09G1241000.v1.1
prunus_persica	Prupe.3G125700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c20g0500241
rosa_laevigata	RLG00000028996
rosa_multiflora	Rmu_sc0010800.1_g000009
rosa_roxburghii	Rroxscaffold_4G00311040
rosa_rugosa	Rorug01G0165300 Rorug06G0126100
rosa_samantha	Rh1AG180400 Rh1BG148600 Rh1CG167300
rosa_wichuraiana	Rw1G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AccII	CGCG	1 cut(s)	551
AciI	CCGC	2 cut(s)	551, 843
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	204, 278
AcvI	CACGTG	1 cut(s)	815
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	4 cut(s)	85, 137, 566, 752
AfiI	CCNNNNNNNGG	3 cut(s)	426, 427, 785
AflIII	ACRYGT	1 cut(s)	812
AluBI	AGCT	5 cut(s)	226, 332, 535, 596, 864
AluI	AGCT	5 cut(s)	226, 332, 535, 596, 864
Alw26I	GTCTC	3 cut(s)	78, 622, 704
AlwI	GGATC	1 cut(s)	438
AlwNI	CAGNNNCTG	2 cut(s)	473, 568
AoxI	GGCC	3 cut(s)	436, 484, 679
ApeKI	GCWGC	2 cut(s)	473, 596
ApoI	RAATTY	2 cut(s)	204, 278
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	1 cut(s)	776
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	259, 800
AvaII	GGWCC	1 cut(s)	776
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbrPI	CACGTG	1 cut(s)	815
BbvI	GCAGC	2 cut(s)	460, 583
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	3 cut(s)	78, 622, 704
BfmI	CTRYAG	3 cut(s)	387, 465, 597
BfoI	RGCGCY	1 cut(s)	840
BisI	GCNGC	4 cut(s)	474, 552, 597, 844
BlsI	GCNGC	4 cut(s)	475, 553, 598, 845
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	793
BmuI	ACTGGG	1 cut(s)	793
BoxI	GACNNNNGTC	1 cut(s)	719
Bpu10I	CCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	815
BsaHI	GRCGYC	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	420, 706
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	3 cut(s)	426, 427, 785
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	7 cut(s)	30, 211, 508, 516, 682, 758, 788
Bse3DI	GCAATG	1 cut(s)	846
BseDI	CCNNGG	2 cut(s)	420, 706
BseLI	CCNNNNNNNGG	3 cut(s)	426, 427, 785
BseMI	GCAATG	1 cut(s)	846
BseNI	ACTGG	7 cut(s)	30, 211, 508, 516, 682, 758, 788
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	460, 583
Bsh1236I	CGCG	1 cut(s)	551
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	3 cut(s)	438, 486, 681
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	422, 636, 666
BslI	CCNNNNNNNGG	3 cut(s)	426, 427, 785
BsmAI	GTCTC	3 cut(s)	78, 622, 704
BsmBI	CGTCTC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	438, 486, 681
Bsp143I	GATC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	2 cut(s)	551, 843
BspANI	GGCC	3 cut(s)	438, 486, 681
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	777
BspMAI	CTGCAG	2 cut(s)	469, 601
BspPI	GGATC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	846
BsrFI	RCCGGY	1 cut(s)	635
BsrI	ACTGG	7 cut(s)	30, 211, 508, 516, 682, 758, 788
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	420, 706
BssMI	GATC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	633
BssT1I	CCWWGG	1 cut(s)	706
Bst4CI	ACNGT	3 cut(s)	391, 545, 564
Bst6I	CTCTTC	1 cut(s)	667
BstACI	GRCGYC	1 cut(s)	633
BstAPI	GCANNNNNTGC	2 cut(s)	464, 473
BstBAI	YACGTR	1 cut(s)	815
BstC8I	GCNNGC	2 cut(s)	683, 841
BstDEI	CTNAG	2 cut(s)	20, 298
BstDSI	CCRYGG	1 cut(s)	706
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	3 cut(s)	78, 622, 704
BstMBI	GATC	1 cut(s)	430
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	5 cut(s)	464, 473, 602, 632, 843
BstNSI	RCATGY	1 cut(s)	84
BstPAI	GACNNNNGTC	1 cut(s)	719
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	3 cut(s)	387, 465, 597
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	460, 583
BsuRI	GGCC	3 cut(s)	438, 486, 681
BtgI	CCRYGG	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	396, 675
Cac8I	GCNNGC	2 cut(s)	683, 841
CaiI	CAGNNNCTG	2 cut(s)	473, 568
CfoI	GCGC	1 cut(s)	839
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	776
CseI	GACGC	3 cut(s)	64, 557, 641
Csp6I	GTAC	4 cut(s)	84, 136, 565, 751
CviAII	CATG	4 cut(s)	81, 124, 289, 707
CviQI	GTAC	4 cut(s)	84, 136, 565, 751
DdeI	CTNAG	2 cut(s)	20, 298
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	667
EarI	CTCTTC	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	706
Eco147I	AGGCCT	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	776
Eco72I	CACGTG	1 cut(s)	815
EcoO109I	RGGNCCY	1 cut(s)	776
EcoT14I	CCWWGG	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	706
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	84, 127, 292, 710
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	4 cut(s)	80, 123, 288, 706
Fnu4HI	GCNGC	4 cut(s)	474, 552, 597, 844
Fsp4HI	GCNGC	4 cut(s)	474, 552, 597, 844
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	4 cut(s)	474, 552, 597, 844
HaeII	RGCGCY	1 cut(s)	840
HaeIII	GGCC	3 cut(s)	438, 486, 681
HapII	CCGG	3 cut(s)	422, 636, 666
HgaI	GACGC	3 cut(s)	64, 557, 641
HhaI	GCGC	1 cut(s)	839
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	4 cut(s)	84, 127, 292, 710
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HinfI	GANTC	3 cut(s)	697, 791, 818
HpaII	CCGG	3 cut(s)	422, 636, 666
HphI	GGTGA	2 cut(s)	259, 800
Hpy166II	GTNNAC	3 cut(s)	306, 541, 590
Hpy188I	TCNGA	4 cut(s)	203, 526, 725, 806
Hpy188III	TCNNGA	2 cut(s)	52, 491
Hpy8I	GTNNAC	3 cut(s)	306, 541, 590
HpyAV	CCTTC	5 cut(s)	121, 367, 476, 497, 827
HpyCH4III	ACNGT	3 cut(s)	391, 545, 564
HpyCH4IV	ACGT	2 cut(s)	219, 814
HpyCH4V	TGCA	6 cut(s)	63, 284, 467, 599, 626, 652
HpyF10VI	GCNNNNNNNGC	5 cut(s)	464, 473, 602, 632, 843
HpyF3I	CTNAG	2 cut(s)	20, 298
HpySE526I	ACGT	2 cut(s)	219, 814
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	4 cut(s)	84, 127, 292, 710
HspAI	GCGC	1 cut(s)	837
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	2 cut(s)	460, 583
MaeII	ACGT	2 cut(s)	219, 814
MaeIII	GTNAC	5 cut(s)	415, 516, 545, 712, 743
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	5 cut(s)	177, 382, 654, 664, 775
MfeI	CAATTG	1 cut(s)	627
MluCI	AATT	3 cut(s)	204, 278, 627
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	2 cut(s)	240, 703
MnlI	CCTC	2 cut(s)	126, 175
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	873
MslI	CAYNNNNRTG	1 cut(s)	851
MspI	CCGG	3 cut(s)	422, 636, 666
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	458
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	5 cut(s)	464, 473, 602, 632, 843
NciI	CCSGG	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	4 cut(s)	84, 127, 292, 710
NlaIV	GGNNCC	1 cut(s)	777
NmuCI	GTSAC	3 cut(s)	516, 545, 712
NspI	RCATGY	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	486
PctI	GAATGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	791, 818
PkrI	GCNGC	4 cut(s)	475, 553, 598, 845
PleI	GAGTC	1 cut(s)	705
PmaCI	CACGTG	1 cut(s)	815
PmlI	CACGTG	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	705
Ppu21I	YACGTR	1 cut(s)	815
PpuMI	RGGWCCY	1 cut(s)	776
PshAI	GACNNNNGTC	1 cut(s)	719
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	776
PspCI	CACGTG	1 cut(s)	815
PspN4I	GGNNCC	1 cut(s)	777
PspPI	GGNCC	1 cut(s)	776
PspPPI	RGGWCCY	1 cut(s)	776
PstI	CTGCAG	2 cut(s)	469, 601
PstNI	CAGNNNCTG	2 cut(s)	473, 568
RsaI	GTAC	4 cut(s)	85, 137, 566, 752
RsaNI	GTAC	4 cut(s)	84, 136, 565, 751
RseI	CAYNNNNRTG	1 cut(s)	851
SaqAI	TTAA	1 cut(s)	873
SatI	GCNGC	4 cut(s)	474, 552, 597, 844
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	1 cut(s)	776
ScaI	AGTACT	1 cut(s)	752
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	1 cut(s)	422
SfcI	CTRYAG	3 cut(s)	387, 465, 597
SgrAI	CRCCGGYG	1 cut(s)	635
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	851
Sse9I	AATT	3 cut(s)	204, 278, 627
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	2 cut(s)	551, 843
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	3 cut(s)	391, 545, 564
TaiI	ACGT	2 cut(s)	222, 817
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	204, 278, 627
TatI	WGTACW	2 cut(s)	83, 750
TauI	GCSGC	2 cut(s)	554, 846
TfiI	GAWTC	2 cut(s)	791, 818
Tru1I	TTAA	1 cut(s)	873
Tru9I	TTAA	1 cut(s)	873
TscAI	CASTG	2 cut(s)	396, 682
TseFI	GTSAC	3 cut(s)	516, 545, 712
TseI	GCWGC	2 cut(s)	473, 596
Tsp45I	GTSAC	3 cut(s)	516, 545, 712
TspDTI	ATGAA	3 cut(s)	140, 572, 593
TspRI	CASTG	2 cut(s)	396, 682
VpaK11BI	GGWCC	1 cut(s)	776
XapI	RAATTY	2 cut(s)	204, 278
XceI	RCATGY	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.