Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006638

Physical Location & Seq

Genomic Coordinates Reverse (-)

1917991 .. 1919760

Gene Structure 1770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCAATTCGCTTGACGCATCTGCGAAAACCTCTTGCTTATTCTCGGTCCTTTGATGTCTGCATTCCGTTTTTCCGGTCAATCTCGTCCTTTGAAGCGGTTGAAAAGGCGATAAAATGTGCTGTTGAAACAAAGGAGTATCTTAGAATCCCCGAACTTGTTGTTTCACTCAAAGAGCCTTACCAAAACTCAACGTTGTTTTCTTTTCTCTCTGCTTTCCAACGTCATCATAGAATCAGAGTCATTGACGAAATCCTCCAAAGTTTTGTTCCTGTGAGACCTCGTTCACTGCCCAAGATTGTCTACTCCAGTCTTCTTACTTATTGCCTTCAGAGTTCCGATCCTCTTCCTTTGTCTTTCGCAATCCTCCAACGCACTCTTCGTTCTGGCTGTCTACCTAACCCTCAGACTCATCTCCTTCTCTCTGATGCTTGGCTTGAACGGCGACGAGGATCCCAGTCTGTTGCAGATATTATTAATGAGATGAAATTGATTGGATACAGTCCTGATACTGGAACCTGCAATTACTTAGTGTCCTCTCTCTGTGCTGTTGATAAGTTGGATGAGGCGATTAAAGTTGTTGAGGAAATGAGTGCAGCTGGCTGTATTCCTGATGTGGAAAGTTATGGGGCGGTGATTAATTCATTGTGTTTGGCTAGAAAGACTACTGATGTGGTGAAGATTGTCAAAGAGATGGTGAGCAAAGCTGGGATCTCTCCACGGAAAGGGATGCTGACAAAAGTAGCAGCAGCTCTCAGAGCCAACAGGGAAATTTGGAAAGCCATTGAGATGATCGAGTTTGTAGAAAGTCGGGATTACCCTGTGGAGTTTGAGAGTTATGAGGTAGTAGTCGAGGGTTGCCTGGAGGTTAGGGAATACATTTTGGCAGGGAAGGTGGTGATGAGAATGACTGATAGAGGGTTCATACCGTATATCAAGGTTAGGCAAAAAGTGGTTGAGCGTCTGATTAACATCGGTGAATGGAAGCTTGCTTGTACTGTTAGACAAAGGGTTTCTGAACTGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009526 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0031967 GO:0031975 GO:0034641 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

343

Amino Acids

38.93

Weight (kDa)

9.01

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	166 - 198	1e-05	PPR repeat
PPR_2	PF13041	169 - 217	1.6e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06270
fragaria_vesca	FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410
malus_domestica	MD09G1241100.v1.1
prunus_persica	Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1
pyrus_communis	pycom09g15980
rosa_chinensis	RchiOBHm_Chr0c20g0500221
rosa_laevigata	RLG00000028997 RLG00000029000
rosa_multiflora	Rmu_co8203790.1_g000001 Rmu_sc0010800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00311050
rosa_rugosa	Rorug01G0165200.1 Rorug06G0126300
rosa_samantha	Rh1AG180300 Rh1BG148400 Rh1CG167200 Rh1DG180400 Rh6CG241000
rosa_wichuraiana	Rw1G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	527
AccI	GTMKAC	2 cut(s)	303, 394
AciI	CCGC	2 cut(s)	98, 632
AclI	AACGTT	1 cut(s)	194
AclWI	GGATC	4 cut(s)	335, 447, 460, 719
AcsI	RAATTY	1 cut(s)	771
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	997
AfiI	CCNNNNNNNGG	2 cut(s)	512, 725
AgsI	TTSAA	4 cut(s)	95, 104, 128, 440
AjnI	CCWGG	1 cut(s)	861
AjuI	GAANNNNNNNTTGG	4 cut(s)	252, 284, 363, 395
AluBI	AGCT	4 cut(s)	599, 707, 752, 988
AluI	AGCT	4 cut(s)	599, 707, 752, 988
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	4 cut(s)	335, 447, 460, 719
ApeKI	GCWGC	3 cut(s)	596, 746, 749
ApoI	RAATTY	1 cut(s)	771
AseI	ATTAAT	2 cut(s)	477, 639
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	5 cut(s)	646, 688, 709, 910, 989
AvaII	GGWCC	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	608, 758, 761
BccI	CCATC	1 cut(s)	688
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	863
BciVI	GTATCC	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	491
BisI	GCNGC	3 cut(s)	597, 747, 750
BlsI	GCNGC	3 cut(s)	598, 748, 751
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	454, 517
BmrFI	CCNGG	1 cut(s)	863
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	28, 418, 720
BmuI	ACTGGG	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	292, 884
BsaBI	GATNNNNATC	1 cut(s)	971
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 725
Bse1I	ACTGG	3 cut(s)	309, 457, 517
Bse8I	GATNNNNATC	1 cut(s)	971
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	2 cut(s)	568, 735
BseJI	GATNNNNATC	1 cut(s)	971
BseLI	CCNNNNNNNGG	2 cut(s)	512, 725
BseMII	CTCAG	3 cut(s)	419, 769, 1013
BseNI	ACTGG	3 cut(s)	309, 457, 517
BseXI	GCAGC	3 cut(s)	608, 758, 761
BseYI	CCCAGC	1 cut(s)	707
BsgI	GTGCAG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	512, 725
BsmAI	GTCTC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	271
Bsp143I	GATC	4 cut(s)	340, 452, 711, 792
BspACI	CCGC	2 cut(s)	98, 632
BspCNI	CTCAG	3 cut(s)	418, 768, 1014
BspLI	GGNNCC	2 cut(s)	454, 517
BspMI	ACCTGC	1 cut(s)	527
BspPI	GGATC	4 cut(s)	335, 447, 460, 719
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	3 cut(s)	309, 457, 517
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	4 cut(s)	340, 452, 711, 792
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	3 cut(s)	503, 930, 1000
Bst6I	CTCTTC	2 cut(s)	351, 384
BstC8I	GCNNGC	2 cut(s)	601, 990
BstDEI	CTNAG	6 cut(s)	143, 405, 529, 755, 1022, 1029
BstDSI	CCRYGG	1 cut(s)	719
BstF5I	GGATG	2 cut(s)	568, 735
BstKTI	GATC	4 cut(s)	343, 455, 714, 795
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	4 cut(s)	340, 452, 711, 792
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 758
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	608, 758, 761
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	452, 711
BstYI	RGATCY	2 cut(s)	452, 711
BsuI	GTATCC	1 cut(s)	491
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	568, 735
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	2 cut(s)	601, 990
Cfr13I	GGNCC	1 cut(s)	48
CseI	GACGC	2 cut(s)	25, 950
Csp6I	GTAC	1 cut(s)	996
CviQI	GTAC	1 cut(s)	996
DdeI	CTNAG	6 cut(s)	143, 405, 529, 755, 1022, 1029
DpnI	GATC	4 cut(s)	342, 454, 713, 794
DpnII	GATC	4 cut(s)	340, 452, 711, 792
Eam1104I	CTCTTC	2 cut(s)	351, 384
EarI	CTCTTC	2 cut(s)	351, 384
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	861
FaiI	YATR	5 cut(s)	231, 627, 840, 926, 933
FblI	GTMKAC	2 cut(s)	303, 394
Fnu4HI	GCNGC	3 cut(s)	597, 747, 750
FokI	GGATG	2 cut(s)	575, 742
Fsp4HI	GCNGC	3 cut(s)	597, 747, 750
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	3 cut(s)	597, 747, 750
GsaI	CCCAGC	1 cut(s)	711
GsuI	CTGGAG	2 cut(s)	292, 884
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	2 cut(s)	25, 950
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	4 cut(s)	147, 234, 240, 409
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	5 cut(s)	646, 688, 709, 910, 989
Hpy166II	GTNNAC	3 cut(s)	287, 304, 395
Hpy188I	TCNGA	8 cut(s)	239, 333, 340, 408, 427, 758, 966, 1018
Hpy188III	TCNNGA	3 cut(s)	506, 611, 812
Hpy8I	GTNNAC	3 cut(s)	287, 304, 395
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	3 cut(s)	338, 428, 886
HpyCH4III	ACNGT	3 cut(s)	503, 930, 1000
HpyCH4IV	ACGT	2 cut(s)	194, 223
HpyCH4V	TGCA	4 cut(s)	63, 467, 522, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 758
HpyF3I	CTNAG	6 cut(s)	143, 405, 529, 755, 1022, 1029
HpySE526I	ACGT	2 cut(s)	194, 223
Kzo9I	GATC	4 cut(s)	340, 452, 711, 792
Lsp1109I	GCAGC	3 cut(s)	608, 758, 761
LweI	GCATC	3 cut(s)	28, 418, 720
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	2 cut(s)	194, 223
MalI	GATC	4 cut(s)	342, 454, 713, 794
MboI	GATC	4 cut(s)	340, 452, 711, 792
MboII	GAAGA	4 cut(s)	305, 338, 371, 691
MflI	RGATCY	2 cut(s)	452, 711
MluCI	AATT	5 cut(s)	6, 488, 523, 640, 771
MlyI	GAGTC	2 cut(s)	249, 403
MmeI	TCCRAC	3 cut(s)	244, 394, 540
MseI	TTAA	4 cut(s)	477, 573, 639, 969
MslI	CAYNNNNRTG	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	2 cut(s)	442, 758
NdeII	GATC	4 cut(s)	340, 452, 711, 792
NlaIV	GGNNCC	2 cut(s)	454, 517
PcsI	WCGNNNNNNNCGW	1 cut(s)	379
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	147, 234
PkrI	GCNGC	3 cut(s)	598, 748, 751
PleI	GAGTC	2 cut(s)	248, 403
PpsI	GAGTC	2 cut(s)	248, 403
PshBI	ATTAAT	2 cut(s)	477, 639
Psp1406I	AACGTT	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	861
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	2 cut(s)	454, 517
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	2 cut(s)	452, 711
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	997
RsaNI	GTAC	1 cut(s)	996
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	4 cut(s)	477, 573, 639, 969
SatI	GCNGC	3 cut(s)	597, 747, 750
Sau3AI	GATC	4 cut(s)	340, 452, 711, 792
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	2 cut(s)	249, 403
ScrFI	CCNGG	1 cut(s)	863
SfaNI	GCATC	3 cut(s)	28, 418, 720
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	788
Sse9I	AATT	5 cut(s)	6, 488, 523, 640, 771
SsiI	CCGC	2 cut(s)	98, 632
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	861
TaaI	ACNGT	3 cut(s)	503, 930, 1000
TaiI	ACGT	2 cut(s)	197, 226
TaqI	TCGA	2 cut(s)	795, 852
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	5 cut(s)	6, 488, 523, 640, 771
TatI	WGTACW	1 cut(s)	995
TfiI	GAWTC	2 cut(s)	147, 234
Tru1I	TTAA	4 cut(s)	477, 573, 639, 969
Tru9I	TTAA	4 cut(s)	477, 573, 639, 969
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	3 cut(s)	596, 746, 749
TspDTI	ATGAA	3 cut(s)	500, 633, 913
TspGWI	ACGGA	2 cut(s)	57, 736
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	48
VspI	ATTAAT	2 cut(s)	477, 639
XapI	RAATTY	1 cut(s)	771
XmiI	GTMKAC	2 cut(s)	303, 394
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.