pycom09g15980

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0006638
Physical Location & Seq
Reverse (-)
16085107 .. 16086144
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15980.1

Sequence Viewer

Length: 1038 bp
ATGGCTTTGAGAGCAGCAAATGCAAAGCTTTGCACATCTCTTCTTCCTGTACCTTGTTGTCTCCTGCAGCATCGCTCCTGTCACTTGATCACTTCATCTCAAATGCTCCAAGAAACCATAAGAAATACGGTTGAAGCCAAAGCATACGAGAAGATACCTGATCTCCTCATTTCCTCTGCCCAAGCATGCCGAAACCCCAATCCTTTCTCATTCCTTTCAACCTATCCCAACAACCTTAGAACACAAGTCGTTGATCAAATTTTGCAGTCTTTCATCCCTCTAAGGCCTCGTTCTAGAGCGCAGATTACTTATTCCTGCCTCCTTTCATTTACACTCCAAAGCTCCAATCCCTTCCCTCTTGCTCTTGCGATTCTCCAACGAACTCTTCGCTCTGGCTGCGTCCCTGTCCCCCAAACCCTTCTTCTCCTCTCTTCTGCTTGGATGAACTGCCGGAAAGAATCTCTGTCTGTGTCTGAGATCTTATTGGATATGCAGTCAATTGGATATCATCCTGACTGTGGAGTGTGCAATTACCTGATATCTTCTTTGTGTTCTGTTGATCAGTTGAATGAGGCGGTTAAACTCTTAAGGGGTATGAGTAGGGTAGGATGTATTCCTGATTTGGAGAGTTTTGACACAGTAATTGGTGCAATGTGCACTGGCAGAAGAACAGCCGAGGCAGTAGATGTGATTAAGCAAATGGTGGAGAAAGTTGGGTTGACTCCAAGGCAGGGGACGGTTATGAAAGTGGCAGCAGCATTGCGAGCAAACAAAGAGATATGGAGAGCAGTTGAGATGATTGGGTTCTTAGAGAGGGAGGGTCACCCTGTCAGCTGTGAGAGCTATGAATTGGTGGTTAACGGGTGCTTGGATGTGGGTGAGTATATTTTGGCGGGGAAGGTGGTGATTAGGATGACGGAGAGAGGTTTTATACCTTATATCAGGACCAGACTGAAGGTTGTTGAGAGGTTGGCTGGCGCTGGTGAATGGGAGCTAGCTTGTTCTGTGAGGCAACGATTTAGAGAATTGAAGTCGTAG

Protein Analysis

346

Amino Acids

38.39

Weight (kDa)

8.85

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 171 - 219 6.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 575, 893
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 518, 731
AflII CTTAAG 1 cut(s) 586
AgsI TTSAA 4 cut(s) 134, 219, 568, 1030
AjuI GAANNNNNNNTTGG 4 cut(s) 369, 401, 405, 437
AluBI AGCT 6 cut(s) 28, 342, 834, 843, 994, 998
AluI AGCT 6 cut(s) 28, 342, 834, 843, 994, 998
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 655
AoxI GGCC 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 655
ApeKI GCWGC 5 cut(s) 14, 67, 396, 752, 755
ApoI RAATTY 1 cut(s) 258
AspLEI GCGC 2 cut(s) 301, 980
AspS9I GGNCC 1 cut(s) 945
AsuHPI GGTGA 4 cut(s) 815, 890, 916, 995
AsuNHI GCTAGC 1 cut(s) 994
AvaII GGWCC 1 cut(s) 945
BaeGI GKGCMC 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 5 cut(s) 26, 79, 383, 764, 767
BclI TGATCA 3 cut(s) 87, 253, 559
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 2 cut(s) 294, 995
BfmI CTRYAG 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 981
BfrI CTTAAG 1 cut(s) 586
BglII AGATCT 1 cut(s) 477
BisI GCNGC 5 cut(s) 15, 68, 397, 753, 756
BlsI GCNGC 5 cut(s) 16, 69, 398, 754, 757
Bme18I GGWCC 1 cut(s) 945
BmgT120I GGNCC 1 cut(s) 945
BmsI GCATC 1 cut(s) 79
BmtI GCTAGC 1 cut(s) 998
BsaJI CCNNGG 2 cut(s) 675, 725
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 731
Bse1I ACTGG 1 cut(s) 664
Bse3DI GCAATG 2 cut(s) 657, 758
BseDI CCNNGG 2 cut(s) 675, 725
BseGI GGATG 6 cut(s) 273, 447, 508, 614, 877, 918
BseLI CCNNNNNNNGG 2 cut(s) 518, 731
BseMI GCAATG 2 cut(s) 657, 758
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 664
BseRI GAGGAG 2 cut(s) 155, 416
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 5 cut(s) 26, 79, 383, 764, 767
BshFI GGCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 1 cut(s) 451
BslFI GGGAC 3 cut(s) 386, 392, 748
BslI CCNNNNNNNGG 2 cut(s) 518, 731
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 3 cut(s) 386, 392, 748
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 659
Bsp143I GATC 5 cut(s) 87, 160, 253, 477, 559
BspACI CCGC 2 cut(s) 575, 893
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 69
BspOI GCTAGC 1 cut(s) 998
BspTI CTTAAG 1 cut(s) 586
BsrDI GCAATG 2 cut(s) 657, 758
BsrI ACTGG 1 cut(s) 664
BssECI CCNNGG 2 cut(s) 675, 725
BssMI GATC 5 cut(s) 87, 160, 253, 477, 559
BssT1I CCWWGG 1 cut(s) 725
Bst4CI ACNGT 4 cut(s) 130, 518, 640, 739
Bst6I CTCTTC 3 cut(s) 45, 390, 436
BstAFI CTTAAG 1 cut(s) 586
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 187, 765, 976, 996
BstDEI CTNAG 4 cut(s) 236, 281, 474, 808
BstEII GGTNACC 1 cut(s) 821
BstF5I GGATG 6 cut(s) 273, 447, 508, 614, 877, 918
BstH2I RGCGCY 1 cut(s) 981
BstHHI GCGC 2 cut(s) 301, 980
BstKTI GATC 5 cut(s) 90, 163, 256, 480, 562
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 5 cut(s) 87, 160, 253, 477, 559
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 396, 764, 840
BstNSI RCATGY 1 cut(s) 189
BstPI GGTNACC 1 cut(s) 821
BstSFI CTRYAG 1 cut(s) 65
BstSLI GKGCMC 1 cut(s) 659
BstV1I GCAGC 5 cut(s) 26, 79, 383, 764, 767
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
BsuRI GGCC 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 6 cut(s) 273, 447, 508, 614, 877, 918
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 4 cut(s) 187, 765, 976, 996
CfoI GCGC 2 cut(s) 301, 980
Cfr13I GGNCC 1 cut(s) 945
CseI GACGC 1 cut(s) 388
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 186
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 4 cut(s) 236, 281, 474, 808
DpnI GATC 5 cut(s) 89, 162, 255, 479, 561
DpnII GATC 5 cut(s) 87, 160, 253, 477, 559
Eam1104I CTCTTC 3 cut(s) 45, 390, 436
EarI CTCTTC 3 cut(s) 45, 390, 436
Eco130I CCWWGG 1 cut(s) 725
Eco147I AGGCCT 1 cut(s) 286
Eco32I GATATC 2 cut(s) 506, 540
Eco47I GGWCC 1 cut(s) 945
Eco57I CTGAAG 1 cut(s) 974
Eco91I GGTNACC 1 cut(s) 821
EcoO65I GGTNACC 1 cut(s) 821
EcoRV GATATC 2 cut(s) 506, 540
EcoT14I CCWWGG 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 1 cut(s) 189
FaqI GGGAC 3 cut(s) 386, 392, 748
FatI CATG 1 cut(s) 185
FauI CCCGC 1 cut(s) 886
FbaI TGATCA 3 cut(s) 87, 253, 559
Fnu4HI GCNGC 5 cut(s) 15, 68, 397, 753, 756
FokI GGATG 6 cut(s) 260, 454, 495, 621, 884, 925
Fsp4HI GCNGC 5 cut(s) 15, 68, 397, 753, 756
FspBI CTAG 2 cut(s) 294, 995
GlaI GCGC 2 cut(s) 300, 979
GluI GCNGC 5 cut(s) 15, 68, 397, 753, 756
HaeII RGCGCY 1 cut(s) 981
HaeIII GGCC 1 cut(s) 286
HapII CCGG 1 cut(s) 451
HgaI GACGC 1 cut(s) 388
HhaI GCGC 2 cut(s) 301, 980
Hin1II CATG 1 cut(s) 189
Hin6I GCGC 2 cut(s) 299, 978
HinP1I GCGC 2 cut(s) 299, 978
HincII GTYRAC 2 cut(s) 720, 859
HindII GTYRAC 2 cut(s) 720, 859
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 3 cut(s) 370, 458, 721
HpaI GTTAAC 1 cut(s) 859
HpaII CCGG 1 cut(s) 451
HphI GGTGA 4 cut(s) 815, 890, 916, 995
Hpy166II GTNNAC 3 cut(s) 657, 720, 859
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 4 cut(s) 294, 512, 617, 943
Hpy8I GTNNAC 3 cut(s) 657, 720, 859
HpyAV CCTTC 4 cut(s) 361, 428, 892, 949
HpyCH4III ACNGT 4 cut(s) 130, 518, 640, 739
HpyCH4V TGCA 8 cut(s) 23, 33, 67, 265, 493, 528, 650, 657
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 396, 764, 840
HpyF3I CTNAG 4 cut(s) 236, 281, 474, 808
Hsp92II CATG 1 cut(s) 189
HspAI GCGC 2 cut(s) 299, 978
Ksp22I TGATCA 3 cut(s) 87, 253, 559
KspAI GTTAAC 1 cut(s) 859
Kzo9I GATC 5 cut(s) 87, 160, 253, 477, 559
LmnI GCTCC 4 cut(s) 80, 111, 347, 991
Lsp1109I GCAGC 5 cut(s) 26, 79, 383, 764, 767
LweI GCATC 1 cut(s) 79
MaeI CTAG 2 cut(s) 294, 995
MaeIII GTNAC 2 cut(s) 80, 821
MalI GATC 5 cut(s) 89, 162, 255, 479, 561
MboI GATC 5 cut(s) 87, 160, 253, 477, 559
MboII GAAGA 8 cut(s) 32, 35, 163, 377, 413, 423, 534, 678
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 659
MluCI AATT 6 cut(s) 258, 498, 529, 642, 848, 1025
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 400
MseI TTAA 4 cut(s) 579, 587, 693, 858
MspA1I CMGCKG 1 cut(s) 834
MspCI CTTAAG 1 cut(s) 586
MspI CCGG 1 cut(s) 451
MunI CAATTG 1 cut(s) 498
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 396, 764, 840
NdeII GATC 5 cut(s) 87, 160, 253, 477, 559
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 2 cut(s) 80, 821
NspI RCATGY 1 cut(s) 189
PaeI GCATGC 1 cut(s) 189
PceI AGGCCT 1 cut(s) 286
PfeI GAWTC 2 cut(s) 370, 458
PkrI GCNGC 5 cut(s) 16, 69, 398, 754, 757
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PspEI GGTNACC 1 cut(s) 821
PspPI GGNCC 1 cut(s) 945
PstI CTGCAG 1 cut(s) 69
PsuI RGATCY 1 cut(s) 477
PvuII CAGCTG 1 cut(s) 834
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 4 cut(s) 579, 587, 693, 858
SatI GCNGC 5 cut(s) 15, 68, 397, 753, 756
Sau3AI GATC 5 cut(s) 87, 160, 253, 477, 559
Sau96I GGNCC 1 cut(s) 945
SchI GAGTC 1 cut(s) 715
SduI GDGCHC 1 cut(s) 659
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 65
SinI GGWCC 1 cut(s) 945
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
SphI GCATGC 1 cut(s) 189
Sse9I AATT 6 cut(s) 258, 498, 529, 642, 848, 1025
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 2 cut(s) 575, 893
SspMI CTAG 2 cut(s) 294, 995
StuI AGGCCT 1 cut(s) 286
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 4 cut(s) 130, 518, 640, 739
TasI AATT 6 cut(s) 258, 498, 529, 642, 848, 1025
TfiI GAWTC 2 cut(s) 370, 458
Tru1I TTAA 4 cut(s) 579, 587, 693, 858
Tru9I TTAA 4 cut(s) 579, 587, 693, 858
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 2 cut(s) 80, 821
TseI GCWGC 5 cut(s) 14, 67, 396, 752, 755
Tsp45I GTSAC 2 cut(s) 80, 821
TspDTI ATGAA 6 cut(s) 84, 262, 315, 458, 758, 861
TspGWI ACGGA 1 cut(s) 932
TspRI CASTG 1 cut(s) 664
Vha464I CTTAAG 1 cut(s) 586
VneI GTGCAC 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 945
XapI RAATTY 1 cut(s) 258
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 1 cut(s) 189
XspI CTAG 2 cut(s) 294, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.