Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006638

Physical Location & Seq

Genomic Coordinates Reverse (-)

31232350 .. 31233695

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029000

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCAATTGTATCGGCAAAGCTTTGCAGAACTCTTCTTCCTTTACATTGTTGTCTCCTCAAGTATCGCTCTATTAACTCAATATCTCCATCGCATTCTCTTCAAGAAACTGTAAAGAATGCAGTTGAAGCCAAAGCCTATGAGAAGATTCCTGATCTTCTCGTTTCCTTTGGACAAGCTTGCGAAAACCCGAATCCGTTTGTGTTCCTATCAACCTTTCCCGACAGCCTTAGAATGCAAGTAGTTGATGAAATTTTACAGACTTTCATCCCCATAAGGCCCCGCTTTCGTGCTCAGGCTGCCTATGCCTACCTCCTGTCTTTTACTCTCCAAAGCTCCAATCCTCTCCCTCTTGGTCTTGCCATTCTCCAGCGAACTCTTCGCTCTGGCTGCGTCCCTGTTGCTCAAACCCGTCTTCTCCTCTCATCATGCCTGAAGCTCTCTCTCTCTCCGGTGCGGTGTCGAACTCCGGATCACGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009526 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0031967 GO:0031975 GO:0034641 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

161

Amino Acids

17.77

Weight (kDa)

9.39

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06270
fragaria_vesca	FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410
malus_domestica	MD09G1241100.v1.1
prunus_persica	Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1
pyrus_communis	pycom09g15980
rosa_chinensis	RchiOBHm_Chr0c20g0500221
rosa_laevigata	RLG00000028997 RLG00000029000
rosa_multiflora	Rmu_co8203790.1_g000001 Rmu_sc0010800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00311050
rosa_rugosa	Rorug01G0165200.1 Rorug06G0126300
rosa_samantha	Rh1AG180300 Rh1BG148400 Rh1CG167200 Rh1DG180400 Rh6CG241000
rosa_wichuraiana	Rw1G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	2 cut(s)	283, 457
AclWI	GGATC	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	455
AgsI	TTSAA	2 cut(s)	104, 128
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	4 cut(s)	22, 179, 336, 439
AluI	AGCT	4 cut(s)	22, 179, 336, 439
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	480
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	299, 390
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	286, 377
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	300, 391
BlsI	GCNGC	2 cut(s)	301, 392
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	451, 469
BseAI	TCCGGA	1 cut(s)	469
BseGI	GGATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	47, 410
BseXI	GCAGC	2 cut(s)	286, 377
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	452, 470
BslFI	GGGAC	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	3 cut(s)	94, 124, 240
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	154, 472
BspACI	CCGC	2 cut(s)	283, 457
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	307
BspEI	TCCGGA	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	480
BssMI	GATC	2 cut(s)	154, 472
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	3 cut(s)	39, 105, 384
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	230, 294
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	157, 475
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	154, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 299, 305, 390
BstV1I	GCAGC	2 cut(s)	286, 377
BstV2I	GAAGAC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	382
CviAII	CATG	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	230, 294
DpnI	GATC	2 cut(s)	156, 474
DpnII	GATC	2 cut(s)	154, 472
Eam1104I	CTCTTC	3 cut(s)	39, 105, 384
EarI	CTCTTC	3 cut(s)	39, 105, 384
Eco57I	CTGAAG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	279
FaeI	CATG	1 cut(s)	432
FaiI	YATR	4 cut(s)	141, 275, 306, 430
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	1 cut(s)	428
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	2 cut(s)	300, 391
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	300, 391
GluI	GCNGC	2 cut(s)	300, 391
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	2 cut(s)	452, 470
HgaI	GACGC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	432
HindIII	AAGCTT	2 cut(s)	20, 177
HinfI	GANTC	2 cut(s)	148, 193
HpaII	CCGG	2 cut(s)	452, 470
Hpy188III	TCNNGA	4 cut(s)	104, 152, 221, 470
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	27, 122, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 299, 305, 390
HpyF3I	CTNAG	2 cut(s)	230, 294
Hsp92II	CATG	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	154, 472
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	8 cut(s)	165, 281, 329, 372, 383, 411, 446, 465
Lsp1109I	GCAGC	2 cut(s)	286, 377
MalI	GATC	2 cut(s)	156, 474
MboI	GATC	2 cut(s)	154, 472
MboII	GAAGA	7 cut(s)	26, 29, 92, 149, 157, 371, 407
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	6, 252
MnlI	CCTC	5 cut(s)	68, 323, 354, 360, 431
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	1 cut(s)	75
MspI	CCGG	2 cut(s)	452, 470
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	3 cut(s)	94, 124, 240
MwoI	GCNNNNNNNGC	4 cut(s)	128, 299, 305, 390
NdeII	GATC	2 cut(s)	154, 472
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	1 cut(s)	281
PctI	GAATGC	3 cut(s)	94, 124, 240
PfeI	GAWTC	2 cut(s)	148, 193
PkrI	GCNGC	2 cut(s)	301, 392
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	300, 391
Sau3AI	GATC	2 cut(s)	154, 472
Sau96I	GGNCC	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	6 cut(s)	24, 181, 218, 315, 338, 441
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	6, 252
SsiI	CCGC	2 cut(s)	283, 457
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	463
TasI	AATT	2 cut(s)	6, 252
TfiI	GAWTC	2 cut(s)	148, 193
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	299, 390
TspDTI	ATGAA	2 cut(s)	256, 264
TspGWI	ACGGA	1 cut(s)	186
XapI	RAATTY	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.