Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006638

Physical Location & Seq

Genomic Coordinates Reverse (-)

11590863 .. 11594523

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G125800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTATCAGAGCAGCAAAGTTTTGCAGATCCTTTCTTCCTCTACATTGTCGTCTCCTCCAATATTGTTCCATCTACTCAATCTCTTCATCACAGATGCTCCAAGAAACTATAAAAAATGCGGTTGAAGCCAAAACTTACCAGAAAATTCCCGATCTTCTCAAATCCTCTGCTCAAGCTTGCCAAAACCCAAATCCTTTCTCATTCCTTTCATCCTTTCCCCACAACCTTAGAACGCAAGTGGTTGATGAAATTTTGCAGTCTTTCATCCCTCTAAGACCTCGCTCTCGGGGTCAGATTGCCTATTCCTACCTCCTGTCCTTTACATTGCAATGCTCCAATCCCTTCCCTCTTGCTCTTGCCATCCTCCAACGAACTCTTCGCTCTGGTTGCATTCCTGTCCCCCAAACCCTTCTTCTCCTCTCTTCTGCTTGGCTGAACTGCCGGAATGAATCTCACTCTGTCTCTAAGATCCTATTAGAAATGCAGTCAATTGGATATCATCCGGACTGTGGTACATGCAACTACCTTATATCGTCTTTGTGTTCTGTTGATCAGTTGAATGAGGCAGTGAAAGTCTTAAAGGAAATGAGTAGGGCAGGATGTGTTCCTGATTTGGAGAGTTTTGACACGGTAATTGGTGCAATGTGCACTGTCAGAAGAACAGCTGAGGCAATAGATATGATTAAGCAAATGGTAGAGAAAGTTGGGTTGACACCAAGGCAGGGGACGATTGCAAAAGTGGCAGCAGCATTGCGAGCAAACAGAAATATATGGAGAGCAGTTGAGATGATTGAGTTCTTAGAGAGGGATGGCTACCCTGTCGGCTTTGAGAGCTATGAGTTGGTGGTTAATGGGTGCTTGGATTGTGGTGAGTATATTTTGGCGGGGAAAGTGGTGATGGGGATGACGGAGAGAGGTTTTATACCTTATATTAGGACCAGGCAGAAGGTTGTTGAGAGGTTGGCTGGTGCTGGTGAATGGAAGCTGGCTTGTTCTGTGAGGCAAAGATTTGGAGAGTTGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009526 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0031967 GO:0031975 GO:0034641 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

344

Amino Acids

38.41

Weight (kDa)

8.94

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06270
fragaria_vesca	FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410
malus_domestica	MD09G1241100.v1.1
prunus_persica	Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1
pyrus_communis	pycom09g15980
rosa_chinensis	RchiOBHm_Chr0c20g0500221
rosa_laevigata	RLG00000028997 RLG00000029000
rosa_multiflora	Rmu_co8203790.1_g000001 Rmu_sc0010800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00311050
rosa_rugosa	Rorug01G0165200.1 Rorug06G0126300
rosa_samantha	Rh1AG180300 Rh1BG148400 Rh1CG167200 Rh1DG180400 Rh6CG241000
rosa_wichuraiana	Rw1G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	2 cut(s)	122, 887
AclWI	GGATC	2 cut(s)	24, 466
AcsI	RAATTY	2 cut(s)	147, 252
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	512, 725
AgsI	TTSAA	2 cut(s)	128, 562
AjnI	CCWGG	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	4 cut(s)	363, 395, 399, 431
AluBI	AGCT	4 cut(s)	179, 668, 837, 988
AluI	AGCT	4 cut(s)	179, 668, 837, 988
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	2 cut(s)	59, 469
Alw44I	GTGCAC	1 cut(s)	649
AlwI	GGATC	2 cut(s)	24, 466
Ama87I	CYCGRG	1 cut(s)	288
Aor13HI	TCCGGA	1 cut(s)	505
ApaLI	GTGCAC	1 cut(s)	649
ApeKI	GCWGC	3 cut(s)	14, 746, 749
ApoI	RAATTY	2 cut(s)	147, 252
AspS9I	GGNCC	1 cut(s)	939
AsuHPI	GGTGA	3 cut(s)	884, 910, 989
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	939
BaeGI	GKGCMC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	653
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	3 cut(s)	26, 758, 761
BccI	CCATC	4 cut(s)	80, 371, 806, 895
BciT130I	CCWGG	1 cut(s)	943
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	59, 469
BisI	GCNGC	3 cut(s)	15, 747, 750
BlsI	GCNGC	3 cut(s)	16, 748, 751
Bme1390I	CCNGG	1 cut(s)	943
Bme18I	GGWCC	1 cut(s)	939
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	939
BmrFI	CCNGG	1 cut(s)	943
BmsI	GCATC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 725
Bse3DI	GCAATG	4 cut(s)	326, 338, 651, 752
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	943
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	7 cut(s)	212, 267, 363, 502, 608, 817, 912
BseLI	CCNNNNNNNGG	2 cut(s)	512, 725
BseMI	GCAATG	4 cut(s)	326, 338, 651, 752
BseMII	CTCAG	1 cut(s)	660
BseRI	GAGGAG	2 cut(s)	47, 410
BseSI	GKGCMC	1 cut(s)	653
BseXI	GCAGC	3 cut(s)	26, 758, 761
BsiHKAI	GWGCWC	1 cut(s)	653
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	445, 506
BslFI	GGGAC	2 cut(s)	386, 742
BslI	CCNNNNNNNGG	2 cut(s)	512, 725
BsmAI	GTCTC	2 cut(s)	59, 469
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	386, 742
BsmI	GAATGC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	4 cut(s)	29, 154, 471, 553
BspACI	CCGC	2 cut(s)	122, 887
BspCNI	CTCAG	1 cut(s)	661
BspEI	TCCGGA	1 cut(s)	505
BspPI	GGATC	2 cut(s)	24, 466
BsrDI	GCAATG	4 cut(s)	326, 338, 651, 752
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	4 cut(s)	29, 154, 471, 553
BssT1I	CCWWGG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	943
Bst4CI	ACNGT	3 cut(s)	512, 634, 655
Bst6I	CTCTTC	3 cut(s)	91, 384, 430
BstC8I	GCNNGC	3 cut(s)	181, 759, 990
BstDEI	CTNAG	6 cut(s)	230, 275, 468, 669, 802, 1029
BstF5I	GGATG	7 cut(s)	212, 267, 363, 502, 608, 817, 912
BstKTI	GATC	4 cut(s)	32, 157, 474, 556
BstMAI	GTCTC	2 cut(s)	59, 469
BstMBI	GATC	4 cut(s)	29, 154, 471, 553
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 128, 390, 743, 758, 834
BstNI	CCWGG	1 cut(s)	943
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	941
BstSLI	GKGCMC	1 cut(s)	653
BstV1I	GCAGC	3 cut(s)	26, 758, 761
BstX2I	RGATCY	2 cut(s)	29, 471
BstYI	RGATCY	2 cut(s)	29, 471
BtsCI	GGATG	7 cut(s)	212, 267, 363, 502, 608, 817, 912
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	576, 651
Cac8I	GCNNGC	3 cut(s)	181, 759, 990
Cfr13I	GGNCC	1 cut(s)	939
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	1 cut(s)	519
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	6 cut(s)	230, 275, 468, 669, 802, 1029
DpnI	GATC	4 cut(s)	31, 156, 473, 555
DpnII	GATC	4 cut(s)	29, 154, 471, 553
Eam1104I	CTCTTC	3 cut(s)	91, 384, 430
EarI	CTCTTC	3 cut(s)	91, 384, 430
Eco130I	CCWWGG	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	939
Eco88I	CYCGRG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	941
EcoRV	GATATC	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	719
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	1 cut(s)	522
FaqI	GGGAC	2 cut(s)	386, 742
FatI	CATG	1 cut(s)	518
FauI	CCCGC	1 cut(s)	880
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	15, 747, 750
FokI	GGATG	7 cut(s)	199, 254, 350, 489, 615, 824, 919
Fsp4HI	GCNGC	3 cut(s)	15, 747, 750
GluI	GCNGC	3 cut(s)	15, 747, 750
HapII	CCGG	2 cut(s)	445, 506
Hin1II	CATG	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	2 cut(s)	445, 506
HphI	GGTGA	3 cut(s)	884, 910, 989
Hpy166II	GTNNAC	2 cut(s)	651, 714
Hpy188I	TCNGA	3 cut(s)	11, 297, 659
Hpy188III	TCNNGA	3 cut(s)	152, 506, 611
Hpy8I	GTNNAC	2 cut(s)	651, 714
HpyAV	CCTTC	3 cut(s)	355, 422, 943
HpyCH4III	ACNGT	3 cut(s)	512, 634, 655
HpyCH4V	TGCA	9 cut(s)	27, 259, 331, 393, 487, 522, 644, 651, 737
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 128, 390, 743, 758, 834
HpyF3I	CTNAG	6 cut(s)	230, 275, 468, 669, 802, 1029
Hsp92II	CATG	1 cut(s)	522
Kpn2I	TCCGGA	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	29, 154, 471, 553
LmnI	GCTCC	2 cut(s)	105, 341
Lsp1109I	GCAGC	3 cut(s)	26, 758, 761
LweI	GCATC	1 cut(s)	87
MalI	GATC	4 cut(s)	31, 156, 473, 555
MboI	GATC	4 cut(s)	29, 154, 471, 553
MboII	GAAGA	7 cut(s)	29, 78, 149, 371, 407, 417, 672
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	2 cut(s)	29, 471
MhlI	GDGCHC	1 cut(s)	653
MluCI	AATT	4 cut(s)	147, 252, 492, 636
MmeI	TCCRAC	1 cut(s)	394
MroI	TCCGGA	1 cut(s)	505
MseI	TTAA	3 cut(s)	581, 687, 852
MslI	CAYNNNNRTG	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	2 cut(s)	445, 506
MspR9I	CCNGG	1 cut(s)	943
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	943
MwoI	GCNNNNNNNGC	6 cut(s)	11, 128, 390, 743, 758, 834
NdeII	GATC	4 cut(s)	29, 154, 471, 553
NlaIII	CATG	1 cut(s)	522
NspI	RCATGY	1 cut(s)	522
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	3 cut(s)	16, 748, 751
Psp6I	CCWGG	1 cut(s)	941
PspGI	CCWGG	1 cut(s)	941
PspPI	GGNCC	1 cut(s)	939
PsuI	RGATCY	2 cut(s)	29, 471
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	581, 687, 852
SatI	GCNGC	3 cut(s)	15, 747, 750
Sau3AI	GATC	4 cut(s)	29, 154, 471, 553
Sau96I	GGNCC	1 cut(s)	939
ScrFI	CCNGG	1 cut(s)	943
SduI	GDGCHC	1 cut(s)	653
SfaNI	GCATC	1 cut(s)	87
SinI	GGWCC	1 cut(s)	939
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	4 cut(s)	147, 252, 492, 636
SsiI	CCGC	2 cut(s)	122, 887
SspI	AATATT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	941
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	3 cut(s)	512, 634, 655
TasI	AATT	4 cut(s)	147, 252, 492, 636
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	3 cut(s)	581, 687, 852
Tru9I	TTAA	3 cut(s)	581, 687, 852
TscAI	CASTG	2 cut(s)	576, 658
TseI	GCWGC	3 cut(s)	14, 746, 749
TspDTI	ATGAA	5 cut(s)	78, 201, 256, 264, 465
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	2 cut(s)	576, 658
VneI	GTGCAC	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	939
XapI	RAATTY	2 cut(s)	147, 252
XceI	RCATGY	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.