Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006638

Physical Location & Seq

Genomic Coordinates Reverse (-)

33297850 .. 33299870

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCTCCACTACACCAAGGTAGAACATGGCAATTGTATCGGCAAAGCTTTGCAGATCTCTTCTTCCCTTTACATTGTTGTCTCCTCAAGTATCGCTCTATTAACTCAATACCTGCATCGCATTCACTTCAAGAAACTGTAAAAAATGCAGTTGAAGCCAAAGCCTATGAGAAGATTCCTGATCTTCTCGTTTCCTTTGGACAAGCTTGCGAAAACCCGAATCCTTTTGCGTTCCTATCAACCTTTCCCGACAGCCTTAGAATGCAAGTTGTTGATGAAATCTTACAGTCTTTCATCCCCATAAGGCCCCGCTTTCGTGCTCAGGCTGCCTATGCCTACCTCCTGTCTTTTTACTCTACAAACCTCCAATCCTCTCCCCCTCTTGGTCTTGCCGTTCTTCAGCGAACTCTTCGCTCTGGTTGCGTCCCTGTTGCTCAAACCCGGCTTCTCCTCTCGTCCGCTTGGGTGAACTGCAGGAAGGAATCTCGGTCTGTCTCTGACGTCCTATTTGAGATGCAGTCAATTGGATATCACCCTGACAGTAGGTCAGAAAAAACTTCTGAGGCATTAGATATGATAAAGAAAATGGTGGAGAAAGTTGGGTTGACACCAAGGCAGGGGACTATTGTGAAAGTAGCAGCAGCATTGCGAGCAAACAGAGAGATATGGAGAGCAGTTGAGCTGATTGAGTTCTTAGAGAGGAAGGATTACCCTGTTGGGTTTGAGAGCTATGATTTAGTGGTTAAAGGCTGCTTGGATTCCGGTGAGAATATTTTGGCCGGGAAGGTGGTCATGAGGATGACAGAGAAAGGCTTCATACCATATATCACGACCAGGCACAAGGTTGTGGACAGGTTGGCTGGTGCTGGTGAGTGGAAGTTAGCTTATGCTGTGAGACAAAGATTTGCAGAATTGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009526 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0031967 GO:0031975 GO:0034641 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

307

Amino Acids

34.8

Weight (kDa)

9.34

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06270
fragaria_vesca	FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410
malus_domestica	MD09G1241100.v1.1
prunus_persica	Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1
pyrus_communis	pycom09g15980
rosa_chinensis	RchiOBHm_Chr0c20g0500221
rosa_laevigata	RLG00000028997 RLG00000029000
rosa_multiflora	Rmu_co8203790.1_g000001 Rmu_sc0010800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00311050
rosa_rugosa	Rorug01G0165200.1 Rorug06G0126300
rosa_samantha	Rh1AG180300 Rh1BG148400 Rh1CG167200 Rh1DG180400 Rh6CG241000
rosa_wichuraiana	Rw1G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	121
AciI	CCGC	2 cut(s)	310, 459
AcoI	YGGCCR	1 cut(s)	777
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	383, 617
AgsI	TTSAA	2 cut(s)	131, 155
AhdI	GACNNNNNGTC	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	833
AluBI	AGCT	5 cut(s)	48, 206, 682, 729, 884
AluI	AGCT	5 cut(s)	48, 206, 682, 729, 884
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	3 cut(s)	86, 499, 889
AoxI	GGCC	2 cut(s)	305, 777
ApeKI	GCWGC	4 cut(s)	326, 638, 641, 750
ArsI	GACNNNNNNTTYG	2 cut(s)	491, 523
Asp700I	GAANNNNTTC	1 cut(s)	812
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	2 cut(s)	442, 781
AsuHPI	GGTGA	4 cut(s)	478, 524, 776, 881
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	313, 650, 653, 737
BceAI	ACGGC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	835
BcnI	CCSGG	2 cut(s)	442, 781
BcoDI	GTCTC	3 cut(s)	86, 499, 889
BfmI	CTRYAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	4 cut(s)	327, 639, 642, 751
BlsI	GCNGC	4 cut(s)	328, 640, 643, 752
Bme1390I	CCNGG	3 cut(s)	442, 781, 835
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	3 cut(s)	442, 781, 835
BmsI	GCATC	2 cut(s)	125, 504
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	442, 781
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	16, 611
BsaWI	WCCGGW	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 617
Bse3DI	GCAATG	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	835
BseDI	CCNNGG	2 cut(s)	16, 611
BseGI	GGATG	2 cut(s)	294, 804
BseLI	CCNNNNNNNGG	2 cut(s)	383, 617
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	2 cut(s)	335, 552
BseRI	GAGGAG	2 cut(s)	74, 440
BseXI	GCAGC	4 cut(s)	313, 650, 653, 737
BshFI	GGCC	2 cut(s)	307, 779
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	442, 762, 780
BslFI	GGGAC	2 cut(s)	410, 634
BslI	CCNNNNNNNGG	2 cut(s)	383, 617
BsmAI	GTCTC	3 cut(s)	86, 499, 889
BsmFI	GGGAC	2 cut(s)	410, 634
BsmI	GAATGC	2 cut(s)	121, 267
BsnI	GGCC	2 cut(s)	307, 779
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	55, 181
BspACI	CCGC	2 cut(s)	310, 459
BspANI	GGCC	2 cut(s)	307, 779
BspCNI	CTCAG	2 cut(s)	334, 553
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	16, 611
BssMI	GATC	2 cut(s)	55, 181
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	16, 611
Bst2UI	CCWGG	1 cut(s)	835
Bst4CI	ACNGT	3 cut(s)	139, 288, 542
Bst6I	CTCTTC	2 cut(s)	65, 414
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	208, 651
BstDEI	CTNAG	5 cut(s)	257, 321, 561, 694, 921
BstF5I	GGATG	2 cut(s)	294, 804
BstKTI	GATC	2 cut(s)	58, 184
BstMAI	GTCTC	3 cut(s)	86, 499, 889
BstMBI	GATC	2 cut(s)	55, 181
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 326, 332, 420, 650
BstNI	CCWGG	1 cut(s)	835
BstSCI	CCNGG	3 cut(s)	440, 779, 833
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	313, 650, 653, 737
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	307, 779
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	294, 804
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	208, 651
CciI	TCATGA	1 cut(s)	792
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	412
CviAII	CATG	2 cut(s)	27, 793
DdeI	CTNAG	5 cut(s)	257, 321, 561, 694, 921
DpnI	GATC	2 cut(s)	57, 183
DpnII	GATC	2 cut(s)	55, 181
DriI	GACNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	2 cut(s)	65, 414
Eam1105I	GACNNNNNGTC	1 cut(s)	544
EarI	CTCTTC	2 cut(s)	65, 414
Eco130I	CCWWGG	2 cut(s)	16, 611
Eco32I	GATATC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	833
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	16, 611
ErhI	CCWWGG	2 cut(s)	16, 611
FaeI	CATG	2 cut(s)	30, 796
FaqI	GGGAC	2 cut(s)	410, 634
FatI	CATG	2 cut(s)	26, 792
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	4 cut(s)	327, 639, 642, 751
FokI	GGATG	2 cut(s)	281, 811
Fsp4HI	GCNGC	4 cut(s)	327, 639, 642, 751
GluI	GCNGC	4 cut(s)	327, 639, 642, 751
HaeIII	GGCC	2 cut(s)	307, 779
HapII	CCGG	3 cut(s)	442, 762, 780
HgaI	GACGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	2 cut(s)	30, 796
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	2 cut(s)	46, 204
HinfI	GANTC	4 cut(s)	175, 220, 482, 758
HpaII	CCGG	3 cut(s)	442, 762, 780
HphI	GGTGA	4 cut(s)	478, 524, 776, 881
Hpy166II	GTNNAC	3 cut(s)	469, 606, 850
Hpy188I	TCNGA	3 cut(s)	499, 550, 562
Hpy188III	TCNNGA	5 cut(s)	131, 179, 248, 793, 829
Hpy8I	GTNNAC	3 cut(s)	469, 606, 850
HpyAV	CCTTC	3 cut(s)	472, 697, 778
HpyCH4III	ACNGT	3 cut(s)	139, 288, 542
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	7 cut(s)	53, 116, 149, 265, 474, 517, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 326, 332, 420, 650
HpyF3I	CTNAG	5 cut(s)	257, 321, 561, 694, 921
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	30, 796
Kzo9I	GATC	2 cut(s)	55, 181
Lsp1109I	GCAGC	4 cut(s)	313, 650, 653, 737
LweI	GCATC	2 cut(s)	125, 504
MaeII	ACGT	1 cut(s)	501
MalI	GATC	2 cut(s)	57, 183
MboI	GATC	2 cut(s)	55, 181
MboII	GAAGA	6 cut(s)	52, 55, 176, 184, 389, 401
MfeI	CAATTG	2 cut(s)	32, 522
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	3 cut(s)	32, 522, 911
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	2 cut(s)	102, 744
MslI	CAYNNNNRTG	1 cut(s)	797
MspI	CCGG	3 cut(s)	442, 762, 780
MspR9I	CCNGG	3 cut(s)	442, 781, 835
MunI	CAATTG	2 cut(s)	32, 522
Mva1269I	GAATGC	2 cut(s)	121, 267
MvaI	CCWGG	1 cut(s)	835
MwoI	GCNNNNNNNGC	5 cut(s)	155, 326, 332, 420, 650
NciI	CCSGG	2 cut(s)	442, 781
NdeII	GATC	2 cut(s)	55, 181
NlaIII	CATG	2 cut(s)	30, 796
NlaIV	GGNNCC	1 cut(s)	308
PagI	TCATGA	1 cut(s)	792
PctI	GAATGC	2 cut(s)	121, 267
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	4 cut(s)	175, 220, 482, 758
PkrI	GCNGC	4 cut(s)	328, 640, 643, 752
Psp6I	CCWGG	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	833
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	2 cut(s)	102, 744
SatI	GCNGC	4 cut(s)	327, 639, 642, 751
Sau3AI	GATC	2 cut(s)	55, 181
Sau96I	GGNCC	1 cut(s)	306
ScrFI	CCNGG	3 cut(s)	442, 781, 835
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	125, 504
SfcI	CTRYAG	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	32, 522, 911
SsiI	CCGC	2 cut(s)	310, 459
SspI	AATATT	1 cut(s)	772
StyD4I	CCNGG	3 cut(s)	440, 779, 833
StyI	CCWWGG	2 cut(s)	16, 611
TaaI	ACNGT	3 cut(s)	139, 288, 542
TaiI	ACGT	1 cut(s)	504
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	3 cut(s)	32, 522, 911
TfiI	GAWTC	4 cut(s)	175, 220, 482, 758
Tru1I	TTAA	2 cut(s)	102, 744
Tru9I	TTAA	2 cut(s)	102, 744
TseI	GCWGC	4 cut(s)	326, 638, 641, 750
TspDTI	ATGAA	3 cut(s)	283, 291, 805
XmnI	GAANNNNTTC	1 cut(s)	812
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.