Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203790.1

Orthogroup ID

OG0006638

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 677

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203790.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 676 bp

atgttacagtctttcatccccataaggccccgctttcgtgctcaggctgcctatgcctacctcctgtcttttactctccaaacctccaatcctctccctcttggtcttgccgttctccagcgaactcttcgctctggttgcgtccctgttgctcaaacccgtcttctcctctcgtccgcttgggtgaactgcaggaaggaatctcggtctgtctcagacaccctatttgagatgcagtcgattggatatcaccctgacagtagtacgtgtaactaccttatatggtctttgtgtgatgttgatcaattgaatgaggctgttaaagtcttgaagggcatgagtagggctggatgcgttcctgatttggagagttttgacacagtagttcgtgcgatgtgcagggtcagaaaaacttctgaggcattagatatgataaagaaaatggtggagaaagttgggttgacaccgaggcaggggactattgtgaaagtagcagcagcattgcgagcaaacagagagatatggagagcagttgagctgattgagttcttagaaaggaaggattaccctgttgggtttgagagctatgatttagtggttaaaggctgcttggattccggtgagaatattttggccgggaaggtggtcatgaggatgacagagaaaggcttcatac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009526 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0031967 GO:0031975 GO:0034641 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

225

Amino Acids

25.23

Weight (kDa)

9.11

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06270
fragaria_vesca	FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410
malus_domestica	MD09G1241100.v1.1
prunus_persica	Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1
pyrus_communis	pycom09g15980
rosa_chinensis	RchiOBHm_Chr0c20g0500221
rosa_laevigata	RLG00000028997 RLG00000029000
rosa_multiflora	Rmu_co8203790.1_g000001 Rmu_sc0010800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00311050
rosa_rugosa	Rorug01G0165200.1 Rorug06G0126300
rosa_samantha	Rh1AG180300 Rh1BG148400 Rh1CG167200 Rh1DG180400 Rh6CG241000
rosa_wichuraiana	Rw1G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	31, 177
AcoI	YGGCCR	1 cut(s)	633
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	310, 331
AluBI	AGCT	2 cut(s)	538, 585
AluI	AGCT	2 cut(s)	538, 585
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	26, 633
ApeKI	GCWGC	4 cut(s)	47, 494, 497, 606
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	2 cut(s)	412, 668
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	3 cut(s)	196, 242, 632
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	4 cut(s)	34, 506, 509, 593
BceAI	ACGGC	1 cut(s)	95
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	4 cut(s)	48, 495, 498, 607
BlsI	GCNGC	4 cut(s)	49, 496, 499, 608
Bme1390I	CCNGG	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	637
BmsI	GCATC	2 cut(s)	222, 341
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	637
BsaAI	YACGTR	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	617
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	3 cut(s)	15, 356, 660
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	3 cut(s)	56, 228, 408
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	34, 506, 509, 593
BsgI	GTGCAG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	28, 635
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	618, 636
BslFI	GGGAC	2 cut(s)	128, 490
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	128, 490
BsnI	GGCC	2 cut(s)	28, 635
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	2 cut(s)	31, 177
BspANI	GGCC	2 cut(s)	28, 635
BspCNI	CTCAG	3 cut(s)	55, 227, 409
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	9, 260, 382
Bst6I	CTCTTC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	4 cut(s)	42, 214, 417, 550
BstF5I	GGATG	3 cut(s)	15, 356, 660
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 53, 138, 506
BstSCI	CCNGG	1 cut(s)	635
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	4 cut(s)	34, 506, 509, 593
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	28, 635
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	15, 356, 660
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	337, 649
CviJI	RGCY	9 cut(s)	28, 47, 317, 347, 538, 585, 606, 635, 669
CviKI_1	RGCY	9 cut(s)	28, 47, 317, 347, 538, 585, 606, 635, 669
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	4 cut(s)	42, 214, 417, 550
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	248
FaeI	CATG	2 cut(s)	340, 652
FaqI	GGGAC	2 cut(s)	128, 490
FatI	CATG	2 cut(s)	336, 648
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	48, 495, 498, 607
FokI	GGATG	3 cut(s)	2, 363, 667
Fsp4HI	GCNGC	4 cut(s)	48, 495, 498, 607
GluI	GCNGC	4 cut(s)	48, 495, 498, 607
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	28, 635
HapII	CCGG	2 cut(s)	618, 636
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	340, 652
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	200, 614
HpaII	CCGG	2 cut(s)	618, 636
HphI	GGTGA	3 cut(s)	196, 242, 632
Hpy166II	GTNNAC	2 cut(s)	187, 462
Hpy188I	TCNGA	3 cut(s)	217, 407, 418
Hpy188III	TCNNGA	3 cut(s)	328, 359, 649
Hpy8I	GTNNAC	2 cut(s)	187, 462
HpyAV	CCTTC	4 cut(s)	190, 325, 553, 634
HpyCH4III	ACNGT	3 cut(s)	9, 260, 382
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	192, 235, 399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 53, 138, 506
HpyF3I	CTNAG	4 cut(s)	42, 214, 417, 550
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	2 cut(s)	340, 652
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
Lsp1109I	GCAGC	4 cut(s)	34, 506, 509, 593
LweI	GCATC	2 cut(s)	222, 341
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	3, 269
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	2 cut(s)	119, 155
MfeI	CAATTG	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	1 cut(s)	305
MnlI	CCTC	9 cut(s)	71, 94, 102, 108, 179, 307, 412, 462, 645
MroXI	GAANNNNTTC	2 cut(s)	412, 668
MseI	TTAA	2 cut(s)	321, 600
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	2 cut(s)	618, 636
MspR9I	CCNGG	1 cut(s)	637
MunI	CAATTG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	47, 53, 138, 506
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	340, 652
NlaIV	GGNNCC	1 cut(s)	29
PagI	TCATGA	1 cut(s)	648
PdmI	GAANNNNTTC	2 cut(s)	412, 668
PfeI	GAWTC	2 cut(s)	200, 614
PkrI	GCNGC	4 cut(s)	49, 496, 499, 608
Ppu21I	YACGTR	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	321, 600
SatI	GCNGC	4 cut(s)	48, 495, 498, 607
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	637
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	7 cut(s)	63, 86, 269, 279, 540, 587, 645
SfaNI	GCATC	2 cut(s)	222, 341
SfcI	CTRYAG	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	653
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	2 cut(s)	31, 177
SspI	AATATT	1 cut(s)	628
StyD4I	CCNGG	1 cut(s)	635
TaaI	ACNGT	3 cut(s)	9, 260, 382
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	239
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	200, 614
Tru1I	TTAA	2 cut(s)	321, 600
Tru9I	TTAA	2 cut(s)	321, 600
TseI	GCWGC	4 cut(s)	47, 494, 497, 606
TspDTI	ATGAA	2 cut(s)	4, 661
XmnI	GAANNNNTTC	2 cut(s)	412, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.