Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006638

Physical Location & Seq

Genomic Coordinates Forward (+)

8295814 .. 8300610

Gene Structure 4797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08410.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAATTGTATCGGCAAAGCTGTGCAGATACCTTCTTCCGTTAAATTGTTGTCTTGTGAAGTATCACTCTATTAACTCAATAGCTCCATCGCATGCACTCCAAGAAACTGTTAAAAATGCAGTTGAAGCCAAAGCCTACCAGGACATTCCTGATCTCCTCATTTCCTTTGAACAAGCTTGCCAAAACCCCAATCCTTTTTCGTTCTTATCAACCTTTCCCCACAGAATGCAAGTAGTTGATGAGATGTTACAGTCTTTCATCCCCATAAGGCCCCGCTCTCGTGCTCAGGCTGCTTATGCATACCTCCTGTCTTTTACTCTCCAAAGCTCCAATCCTCTCCCTCTTGGTCTCGCGATTCTTCAGCGCACTCTTCGCTCTGGTTGCGTCCCTGTTGCTCAAACCCGTCTTCTCCTCTCGTCTGCTTGGCTGGACTGCAGGAAGGAATCTCGGTCTGTCTCTGACATCCTGTTTGAGATGCAGTCAATTGGATATAACCCCGACTGTAGCACATGCAACTACCTTATATCGTCTTTGTGTGCTGTTGATCAGTTGGATGAGGCTGTTAAGGTCTTGAAGGGCATGAGTAAGGCTGGGTGTGTTCCTGATTTGGAGAGTTTTGACACAGTAGTCGGTGCAATGTGCACGGTCAGAAAAACTTCTGAGGCATTGGATATGATACAGAAAATGGTGGAGAAAGTTGGGTTGACACCGAGGCAGGGGACTATTGTGAAAGTAGCATCAGCATTGCGAGCAAACAAAGAGATATGGAGAGCAGTTGAACTGATTGAGTTCTTAGAGAGGAAGGATTACCCTGTCGGTTTTGAGAGCTATGATTTGGTGGTTAAAGGCTGCTTGGATTCTGGTGAGAATATTTTGGCAGGGAAACTGGTCATGGGGATGACAGAGAAAGGTTTCGTACCATATATCAGGACCAGGCACAAGGTTGTGGAGAGGTTGGCTGGTGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009526 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0031967 GO:0031975 GO:0034641 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

325

Amino Acids

35.94

Weight (kDa)

8.2

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	167 - 215	5.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06270
fragaria_vesca	FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410
malus_domestica	MD09G1241100.v1.1
prunus_persica	Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1
pyrus_communis	pycom09g15980
rosa_chinensis	RchiOBHm_Chr0c20g0500221
rosa_laevigata	RLG00000028997 RLG00000029000
rosa_multiflora	Rmu_co8203790.1_g000001 Rmu_sc0010800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00311050
rosa_rugosa	Rorug01G0165200.1 Rorug06G0126300
rosa_samantha	Rh1AG180300 Rh1BG148400 Rh1CG167200 Rh1DG180400 Rh6CG241000
rosa_wichuraiana	Rw1G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	279
AccII	CGCG	1 cut(s)	356
AciI	CCGC	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	921
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	128, 173, 577, 782
AjnI	CCWGG	2 cut(s)	141, 935
AluBI	AGCT	5 cut(s)	22, 86, 179, 330, 831
AluI	AGCT	5 cut(s)	22, 86, 179, 330, 831
Alw21I	GWGCWC	2 cut(s)	289, 647
Alw26I	GTCTC	2 cut(s)	356, 463
Alw44I	GTGCAC	1 cut(s)	643
AoxI	GGCC	1 cut(s)	272
ApaLI	GTGCAC	1 cut(s)	643
ApeKI	GCWGC	2 cut(s)	293, 852
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
Asp700I	GAANNNNTTC	2 cut(s)	658, 914
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	273, 933
AsuHPI	GGTGA	1 cut(s)	878
AvaII	GGWCC	1 cut(s)	933
BaeGI	GKGCMC	1 cut(s)	647
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	2 cut(s)	289, 647
BbvI	GCAGC	2 cut(s)	280, 839
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	143, 937
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	356, 463
BfmI	CTRYAG	2 cut(s)	436, 505
BisI	GCNGC	2 cut(s)	294, 853
BlsI	GCNGC	2 cut(s)	295, 854
Bme1390I	CCNGG	2 cut(s)	143, 937
Bme18I	GGWCC	1 cut(s)	933
BmgT120I	GGNCC	2 cut(s)	273, 933
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	143, 937
BmsI	GCATC	2 cut(s)	468, 749
BpiI	GAAGAC	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	894
Bse3DI	GCAATG	2 cut(s)	645, 746
BseBI	CCWGG	2 cut(s)	143, 937
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	4 cut(s)	261, 465, 562, 906
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMI	GCAATG	2 cut(s)	645, 746
BseMII	CTCAG	3 cut(s)	302, 654, 960
BseNI	ACTGG	1 cut(s)	894
BseRI	GAGGAG	2 cut(s)	149, 404
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	2 cut(s)	280, 839
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	289, 647
BslFI	GGGAC	2 cut(s)	374, 736
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	2 cut(s)	356, 463
BsmFI	GGGAC	2 cut(s)	374, 736
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	289, 647
Bsp143I	GATC	2 cut(s)	154, 547
Bsp68I	TCGCGA	1 cut(s)	356
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	3 cut(s)	301, 655, 961
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	645, 746
BsrI	ACTGG	1 cut(s)	894
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	2 cut(s)	154, 547
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	143, 937
Bst4CI	ACNGT	5 cut(s)	112, 255, 506, 628, 649
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	96, 181, 753
BstDEI	CTNAG	4 cut(s)	288, 663, 796, 969
BstF5I	GGATG	4 cut(s)	261, 465, 562, 906
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	157, 550
BstMAI	GTCTC	2 cut(s)	356, 463
BstMBI	GATC	2 cut(s)	154, 547
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 293, 299, 375, 384, 752
BstNI	CCWGG	2 cut(s)	143, 937
BstNSI	RCATGY	2 cut(s)	98, 516
BstSCI	CCNGG	2 cut(s)	141, 935
BstSFI	CTRYAG	2 cut(s)	436, 505
BstSLI	GKGCMC	1 cut(s)	647
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	280, 839
BstV2I	GAAGAC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	274
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	261, 465, 562, 906
BtuMI	TCGCGA	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	96, 181, 753
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	273, 933
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	920
CviAII	CATG	4 cut(s)	95, 513, 583, 895
CviQI	GTAC	1 cut(s)	920
DdeI	CTNAG	4 cut(s)	288, 663, 796, 969
DpnI	GATC	2 cut(s)	156, 549
DpnII	GATC	2 cut(s)	154, 547
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	933
Eco57I	CTGAAG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	141, 935
EcoT22I	ATGCAT	1 cut(s)	304
FaeI	CATG	4 cut(s)	98, 516, 586, 898
FaqI	GGGAC	2 cut(s)	374, 736
FatI	CATG	4 cut(s)	94, 512, 582, 894
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	294, 853
FokI	GGATG	4 cut(s)	248, 452, 569, 913
Fsp4HI	GCNGC	2 cut(s)	294, 853
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	294, 853
GsaI	CCCAGC	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	274
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	4 cut(s)	98, 516, 586, 898
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	3 cut(s)	358, 446, 860
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	2 cut(s)	645, 708
Hpy188I	TCNGA	3 cut(s)	463, 653, 664
Hpy188III	TCNNGA	5 cut(s)	152, 355, 574, 605, 931
Hpy8I	GTNNAC	2 cut(s)	645, 708
HpyAV	CCTTC	4 cut(s)	44, 436, 571, 799
HpyCH4III	ACNGT	5 cut(s)	112, 255, 506, 628, 649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 293, 299, 375, 384, 752
HpyF3I	CTNAG	4 cut(s)	288, 663, 796, 969
Hsp92II	CATG	4 cut(s)	98, 516, 586, 898
HspAI	GCGC	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	154, 547
LmnI	GCTCC	2 cut(s)	91, 335
Lsp1109I	GCAGC	2 cut(s)	280, 839
LweI	GCATC	2 cut(s)	468, 749
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	2 cut(s)	156, 549
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	2 cut(s)	154, 547
MboII	GAAGA	4 cut(s)	29, 353, 365, 401
MfeI	CAATTG	2 cut(s)	6, 486
MhlI	GDGCHC	2 cut(s)	289, 647
MluCI	AATT	3 cut(s)	6, 46, 486
MmeI	TCCRAC	1 cut(s)	534
Mph1103I	ATGCAT	1 cut(s)	304
MroXI	GAANNNNTTC	2 cut(s)	658, 914
MseI	TTAA	5 cut(s)	44, 75, 114, 567, 846
MslI	CAYNNNNRTG	1 cut(s)	899
MspR9I	CCNGG	2 cut(s)	143, 937
MunI	CAATTG	2 cut(s)	6, 486
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	2 cut(s)	143, 937
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	6 cut(s)	128, 293, 299, 375, 384, 752
NdeII	GATC	2 cut(s)	154, 547
NlaIII	CATG	4 cut(s)	98, 516, 586, 898
NlaIV	GGNNCC	1 cut(s)	275
NruI	TCGCGA	1 cut(s)	356
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	2 cut(s)	98, 516
PaeI	GCATGC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	2 cut(s)	658, 914
PfeI	GAWTC	3 cut(s)	358, 446, 860
PkrI	GCNGC	2 cut(s)	295, 854
Psp6I	CCWGG	2 cut(s)	141, 935
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	2 cut(s)	141, 935
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	273, 933
PstI	CTGCAG	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	356
RsaI	GTAC	1 cut(s)	921
RsaNI	GTAC	1 cut(s)	920
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	5 cut(s)	44, 75, 114, 567, 846
SatI	GCNGC	2 cut(s)	294, 853
Sau3AI	GATC	2 cut(s)	154, 547
Sau96I	GGNCC	2 cut(s)	273, 933
ScrFI	CCNGG	2 cut(s)	143, 937
SduI	GDGCHC	2 cut(s)	289, 647
SfaNI	GCATC	2 cut(s)	468, 749
SfcI	CTRYAG	2 cut(s)	436, 505
SinI	GGWCC	1 cut(s)	933
SmiMI	CAYNNNNRTG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	3 cut(s)	6, 46, 486
SsiI	CCGC	1 cut(s)	277
SspI	AATATT	1 cut(s)	874
StyD4I	CCNGG	2 cut(s)	141, 935
TaaI	ACNGT	5 cut(s)	112, 255, 506, 628, 649
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	3 cut(s)	6, 46, 486
TfiI	GAWTC	3 cut(s)	358, 446, 860
Tru1I	TTAA	5 cut(s)	44, 75, 114, 567, 846
Tru9I	TTAA	5 cut(s)	44, 75, 114, 567, 846
TseI	GCWGC	2 cut(s)	293, 852
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	30
VneI	GTGCAC	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	933
XceI	RCATGY	2 cut(s)	98, 516
XmnI	GAANNNNTTC	2 cut(s)	658, 914
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.