Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006638

Physical Location & Seq

Genomic Coordinates Forward (+)

24307971 .. 24309002

Gene Structure 1032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG148400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCAATTGTATCGGCAAAGCTTTGCAGAACTCTTCTTCCTTTACATTGTTGTCTCCTCAAGTATCGCTCTATTAACTCAATATCTGCATCGCATTCACTTCAAGAAACTGTAAAAATTGCAGTTGAAGCCAAAGCCTATGAGAAGATTCCTGATCTTCTCGTTTCCTTTGAACAAGCTTGCCAAAACCCGAATCCTTTTGCGTTCCTATCAACCTTTCCCGACAGCCTTAGAATGCAAGTTGTTGATGAAATCTTACAGTCTTTCATCCCCATAAGGCCCCGCTTTCGTGCTCAGGCTGCCTATGCCTACCTCCTGTCTTTTACTCTACAAACCTCCAATCCTCTCCCTCTTGGTCTTGCCGTTCTCCAGCGAACTCTTCGCTCTGGTTGCGTCCCTGTTGCCCAAACCCGTCTTCTCCTCTCGTCCGCTTGGGTGAACTGCAGGAAGGAACCTCGGTCTGTCTCTGACACCCTGTTTGAGATGCAGTCAATTGGCTATCACCCTGACAGTAGTACGTGTAACTACCTTATATGGTCTTTGTGTGATGTTGATCAATTGGATGAGGCTGTTAAAGTCTTGAAGGGCATGAGTAGGGCTGGATGTGTTCCTGATTTGGAGAGTTTTGACACAGTAGTTCGTGCAATGTGCAGGGTCAGAAAAACTTCTGAGGCATTAGATATGATAAAGAAAATGGTGGAGAAAGTTGGGTTGACACCGAGGCAGGGGACTATTGTGAAAGTAGCGGCAGCATTGCGAGCAAACAGAGAGATATGGAGAGCAGTTGAGCTGATTGAGTTCTTAGAGAGGAAGGATTACCCTGTTGGGTTTGAGAGCTATGATTTAGTGGTTAAAGGCTGCTTGGATTCCGGTGAGAATATTTTGGCCGGGAAGGTGGTCATGAGGATGACAGAGAAAGGCTTCATACCGTATATCAGGACCAGGCACAAGGTTGTGGACAGGTTGGCTGGTGCTGGTGAGTGGAAGTTAGCTTATGCTGTGAGACAAAGATTTGCAGAATTGAGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009526 GO:0009536 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031090 GO:0031967 GO:0031975 GO:0034641 GO:0042170 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

343

Amino Acids

38.59

Weight (kDa)

9.15

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	169 - 218	1.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06270
fragaria_vesca	FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410 FvH4_7g08410
malus_domestica	MD09G1241100.v1.1
prunus_persica	Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1 Prupe.3G125800_v2.0.a1
pyrus_communis	pycom09g15980
rosa_chinensis	RchiOBHm_Chr0c20g0500221
rosa_laevigata	RLG00000028997 RLG00000029000
rosa_multiflora	Rmu_co8203790.1_g000001 Rmu_sc0010800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00311050
rosa_rugosa	Rorug01G0165200.1 Rorug06G0126300
rosa_samantha	Rh1AG180300 Rh1BG148400 Rh1CG167200 Rh1DG180400 Rh6CG241000
rosa_wichuraiana	Rw1G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	283, 429, 746
AcoI	YGGCCR	1 cut(s)	885
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	104, 128, 173, 583
AjnI	CCWGG	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	5 cut(s)	22, 179, 790, 837, 992
AluI	AGCT	5 cut(s)	22, 179, 790, 837, 992
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	3 cut(s)	59, 469, 997
AoxI	GGCC	2 cut(s)	278, 885
ApeKI	GCWGC	3 cut(s)	299, 749, 858
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
Asp700I	GAANNNNTTC	2 cut(s)	664, 920
AspS9I	GGNCC	2 cut(s)	279, 939
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	4 cut(s)	448, 494, 884, 989
AvaII	GGWCC	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	286, 761, 845
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	943
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	3 cut(s)	59, 469, 997
BfmI	CTRYAG	1 cut(s)	442
BisI	GCNGC	4 cut(s)	300, 747, 750, 859
BlsI	GCNGC	4 cut(s)	301, 748, 751, 860
Bme1390I	CCNGG	2 cut(s)	889, 943
Bme18I	GGWCC	1 cut(s)	939
BmgT120I	GGNCC	2 cut(s)	279, 939
BmiI	GGNNCC	2 cut(s)	281, 453
BmrFI	CCNGG	2 cut(s)	889, 943
BmsI	GCATC	2 cut(s)	98, 474
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	889
BsaAI	YACGTR	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	455, 719
BsaWI	WCCGGW	1 cut(s)	869
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse3DI	GCAATG	2 cut(s)	651, 752
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	943
BseDI	CCNNGG	2 cut(s)	455, 719
BseGI	GGATG	4 cut(s)	267, 568, 608, 912
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	2 cut(s)	651, 752
BseMII	CTCAG	2 cut(s)	308, 660
BseRI	GAGGAG	2 cut(s)	47, 410
BseXI	GCAGC	3 cut(s)	286, 761, 845
BsgI	GTGCAG	1 cut(s)	670
BshFI	GGCC	2 cut(s)	280, 887
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	870, 888
BslFI	GGGAC	2 cut(s)	380, 742
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	3 cut(s)	59, 469, 997
BsmFI	GGGAC	2 cut(s)	380, 742
BsmI	GAATGC	2 cut(s)	94, 240
BsnI	GGCC	2 cut(s)	280, 887
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	154, 553
BspACI	CCGC	3 cut(s)	283, 429, 746
BspANI	GGCC	2 cut(s)	280, 887
BspCNI	CTCAG	2 cut(s)	307, 661
BspHI	TCATGA	1 cut(s)	900
BspLI	GGNNCC	2 cut(s)	281, 453
BspMAI	CTGCAG	1 cut(s)	446
BsrDI	GCAATG	2 cut(s)	651, 752
BssECI	CCNNGG	2 cut(s)	455, 719
BssMI	GATC	2 cut(s)	154, 553
Bst2UI	CCWGG	1 cut(s)	943
Bst4CI	ACNGT	5 cut(s)	112, 261, 512, 634, 930
Bst6I	CTCTTC	2 cut(s)	39, 384
BstBAI	YACGTR	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	181, 759
BstDEI	CTNAG	5 cut(s)	230, 294, 669, 802, 1029
BstF5I	GGATG	4 cut(s)	267, 568, 608, 912
BstKTI	GATC	2 cut(s)	157, 556
BstMAI	GTCTC	3 cut(s)	59, 469, 997
BstMBI	GATC	2 cut(s)	154, 553
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 299, 305, 390, 758
BstNI	CCWGG	1 cut(s)	943
BstSCI	CCNGG	2 cut(s)	887, 941
BstSFI	CTRYAG	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	286, 761, 845
BstV2I	GAAGAC	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	280, 887
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	267, 568, 608, 912
Cac8I	GCNNGC	2 cut(s)	181, 759
CciI	TCATGA	1 cut(s)	900
Cfr13I	GGNCC	2 cut(s)	279, 939
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	2 cut(s)	589, 901
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	5 cut(s)	230, 294, 669, 802, 1029
DpnI	GATC	2 cut(s)	156, 555
DpnII	GATC	2 cut(s)	154, 553
EaeI	YGGCCR	1 cut(s)	885
Eam1104I	CTCTTC	2 cut(s)	39, 384
EarI	CTCTTC	2 cut(s)	39, 384
Eco47I	GGWCC	1 cut(s)	939
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	941
FaeI	CATG	2 cut(s)	592, 904
FaqI	GGGAC	2 cut(s)	380, 742
FatI	CATG	2 cut(s)	588, 900
FauI	CCCGC	1 cut(s)	290
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	4 cut(s)	300, 747, 750, 859
FokI	GGATG	4 cut(s)	254, 575, 615, 919
Fsp4HI	GCNGC	4 cut(s)	300, 747, 750, 859
GluI	GCNGC	4 cut(s)	300, 747, 750, 859
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	280, 887
HapII	CCGG	2 cut(s)	870, 888
HgaI	GACGC	1 cut(s)	382
Hin1II	CATG	2 cut(s)	592, 904
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HindIII	AAGCTT	2 cut(s)	20, 177
HinfI	GANTC	3 cut(s)	148, 193, 866
HpaII	CCGG	2 cut(s)	870, 888
HphI	GGTGA	4 cut(s)	448, 494, 884, 989
Hpy166II	GTNNAC	3 cut(s)	439, 714, 958
Hpy188I	TCNGA	3 cut(s)	469, 659, 670
Hpy188III	TCNNGA	7 cut(s)	104, 152, 221, 580, 611, 901, 937
Hpy8I	GTNNAC	3 cut(s)	439, 714, 958
HpyAV	CCTTC	4 cut(s)	442, 577, 805, 886
HpyCH4III	ACNGT	5 cut(s)	112, 261, 512, 634, 930
HpyCH4IV	ACGT	1 cut(s)	518
HpyCH4V	TGCA	9 cut(s)	27, 89, 122, 238, 444, 487, 644, 651, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 299, 305, 390, 758
HpyF3I	CTNAG	5 cut(s)	230, 294, 669, 802, 1029
HpySE526I	ACGT	1 cut(s)	518
Hsp92II	CATG	2 cut(s)	592, 904
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	154, 553
Lsp1109I	GCAGC	3 cut(s)	286, 761, 845
LweI	GCATC	2 cut(s)	98, 474
MaeII	ACGT	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	2 cut(s)	156, 555
MboI	GATC	2 cut(s)	154, 553
MboII	GAAGA	6 cut(s)	26, 29, 149, 157, 371, 407
MfeI	CAATTG	3 cut(s)	6, 492, 557
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	5 cut(s)	6, 117, 492, 557, 1019
MroXI	GAANNNNTTC	2 cut(s)	664, 920
MseI	TTAA	3 cut(s)	75, 573, 852
MslI	CAYNNNNRTG	1 cut(s)	905
MspI	CCGG	2 cut(s)	870, 888
MspR9I	CCNGG	2 cut(s)	889, 943
MunI	CAATTG	3 cut(s)	6, 492, 557
Mva1269I	GAATGC	2 cut(s)	94, 240
MvaI	CCWGG	1 cut(s)	943
MwoI	GCNNNNNNNGC	5 cut(s)	128, 299, 305, 390, 758
NciI	CCSGG	1 cut(s)	889
NdeII	GATC	2 cut(s)	154, 553
NlaIII	CATG	2 cut(s)	592, 904
NlaIV	GGNNCC	2 cut(s)	281, 453
PagI	TCATGA	1 cut(s)	900
PctI	GAATGC	2 cut(s)	94, 240
PdmI	GAANNNNTTC	2 cut(s)	664, 920
PfeI	GAWTC	3 cut(s)	148, 193, 866
PkrI	GCNGC	4 cut(s)	301, 748, 751, 860
Ppu21I	YACGTR	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	941
PspGI	CCWGG	1 cut(s)	941
PspN4I	GGNNCC	2 cut(s)	281, 453
PspPI	GGNCC	2 cut(s)	279, 939
PstI	CTGCAG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	905
SaqAI	TTAA	3 cut(s)	75, 573, 852
SatI	GCNGC	4 cut(s)	300, 747, 750, 859
Sau3AI	GATC	2 cut(s)	154, 553
Sau96I	GGNCC	2 cut(s)	279, 939
ScrFI	CCNGG	2 cut(s)	889, 943
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	98, 474
SfcI	CTRYAG	1 cut(s)	442
SinI	GGWCC	1 cut(s)	939
SmiMI	CAYNNNNRTG	1 cut(s)	905
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	6, 117, 492, 557, 1019
SsiI	CCGC	3 cut(s)	283, 429, 746
SspI	AATATT	1 cut(s)	880
StyD4I	CCNGG	2 cut(s)	887, 941
TaaI	ACNGT	5 cut(s)	112, 261, 512, 634, 930
TaiI	ACGT	1 cut(s)	521
TaqII	GACCGA	1 cut(s)	447
TasI	AATT	5 cut(s)	6, 117, 492, 557, 1019
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	3 cut(s)	148, 193, 866
Tru1I	TTAA	3 cut(s)	75, 573, 852
Tru9I	TTAA	3 cut(s)	75, 573, 852
TseI	GCWGC	3 cut(s)	299, 749, 858
TspDTI	ATGAA	3 cut(s)	256, 264, 913
VpaK11BI	GGWCC	1 cut(s)	939
XmnI	GAANNNNTTC	2 cut(s)	664, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.