AT1G06980

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014200
Physical Location & Seq
Reverse (-)
2142939 .. 2143977
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06980.1

Sequence Viewer

Length: 510 bp
ATGGGAAACAGCCTAAGGTGTTGTCTGGCTTGTGTTCTTCCATGTGGAGCACTAGATTTGATCAGGATCGTTCATCTAAACGGCTACGTTGAGGAGATCACACGGTCAATAACCGCCGGAGAGATCCTCCAAGCAAACCCTAACCATGTCCTAAGCAAACCATGTTCTCAAGGAGTTGTCCGCAAAATCTTGATCTTGTCTCCTGAATCCGAGCTCAAACGAGGAAGCATCTATTTTCTCATCCCCGATTCTTCCTTGCCGGAGAAGAAAAGGCGGAGAAAGGACACTCCTCGCCGGAAGAAGAATCTCCAAAACCCTAGTGCCGACGCCGCCGGCCGAGAAATTAAAGGTGATGAGGAATGTGTGAAGTTGTGTGAGAAGTACTTAGAAGAAGTAGTGTCGTCGGCGTCGACAGGTAAAGAGCACCGTCATCGCCGGCGGCACAGCAGATCGGCGTCAGTATCCACGTGGCGACCTCTCCTTGACAGTATCTCTGAGGATCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

9.28

Isoelectric Point (pI)

68.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 166 1.4e-37 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06980 AT2G30230
fragaria_vesca FvH4_3g39820
malus_domestica MD03G1057000.v1.1 MD11G1058700.v1.1
prunus_persica Prupe.6G047800_v2.0.a1
pyrus_communis pycom03g04530 pycom11g04880
rosa_chinensis RchiOBHm_Chr5g0071711
rosa_laevigata RLG00000036243
rosa_multiflora Rmu_sc0022933.1_g000001
rosa_roxburghii Rroxscaffold_1G00009470
rosa_rugosa Rorug05G0414300
rosa_samantha Rh5BG490000 Rh5CG514000 Rh5DG500800
rosa_wichuraiana Rw5G043710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 410
AciI CCGC 5 cut(s) 114, 181, 274, 330, 439
AclWI GGATC 3 cut(s) 74, 118, 507
AcoI YGGCCR 1 cut(s) 334
AcvI CACGTG 1 cut(s) 468
AcyI GRCGYC 3 cut(s) 327, 407, 455
AfaI GTAC 1 cut(s) 383
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 3 cut(s) 52, 216, 426
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 3 cut(s) 74, 118, 507
AoxI GGCC 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 362
AxyI CCTNAGG 1 cut(s) 14
BanII GRGCYC 1 cut(s) 216
BbrPI CACGTG 1 cut(s) 468
Bbv12I GWGCWC 3 cut(s) 52, 216, 426
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciVI GTATCC 1 cut(s) 472
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 2 cut(s) 53, 318
BfuI GTATCC 1 cut(s) 472
BisI GCNGC 2 cut(s) 330, 440
BlsI GCNGC 2 cut(s) 331, 441
BmcAI AGTACT 1 cut(s) 383
BmsI GCATC 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 3 cut(s) 327, 407, 455
Bse118I RCCGGY 2 cut(s) 332, 435
Bse21I CCTNAGG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 65
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 65
BseMII CTCAG 1 cut(s) 486
BseRI GAGGAG 2 cut(s) 107, 279
BseX3I CGGCCG 1 cut(s) 334
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 3 cut(s) 52, 216, 426
BsiSI CCGG 5 cut(s) 117, 260, 295, 333, 436
BsmAI GTCTC 1 cut(s) 204
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 52, 216, 426
Bsp143I GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
BspACI CCGC 5 cut(s) 114, 181, 274, 330, 439
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 487
BspPI GGATC 3 cut(s) 74, 118, 507
BsrFI RCCGGY 2 cut(s) 332, 435
BssAI RCCGGY 2 cut(s) 332, 435
BssMI GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
BssNI GRCGYC 3 cut(s) 327, 407, 455
Bst4CI ACNGT 3 cut(s) 105, 428, 488
BstACI GRCGYC 3 cut(s) 327, 407, 455
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 334, 437
BstDEI CTNAG 4 cut(s) 14, 152, 385, 495
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 7 cut(s) 63, 69, 99, 126, 195, 452, 502
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstX2I RGATCY 2 cut(s) 123, 499
BstYI RGATCY 2 cut(s) 123, 499
BstZI CGGCCG 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 14
BsuI GTATCC 1 cut(s) 472
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 334, 437
Cfr10I RCCGGY 2 cut(s) 332, 435
CseI GACGC 3 cut(s) 335, 396, 444
Csp6I GTAC 1 cut(s) 382
CviAII CATG 3 cut(s) 42, 146, 162
CviJI RGCY 5 cut(s) 12, 29, 84, 214, 336
CviKI_1 RGCY 5 cut(s) 12, 29, 84, 214, 336
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 4 cut(s) 14, 152, 385, 495
DpnI GATC 7 cut(s) 62, 68, 98, 125, 194, 451, 501
DpnII GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
EaeI YGGCCR 1 cut(s) 334
EagI CGGCCG 1 cut(s) 334
EciI GGCGGA 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 214
EclXI CGGCCG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 216
Eco52I CGGCCG 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 214
Eco72I CACGTG 1 cut(s) 468
Eco81I CCTNAGG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 3 cut(s) 45, 149, 165
FaiI YATR 3 cut(s) 43, 147, 163
FatI CATG 3 cut(s) 41, 145, 161
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 2 cut(s) 330, 440
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 330, 440
FspBI CTAG 2 cut(s) 53, 318
GluI GCNGC 2 cut(s) 330, 440
HaeIII GGCC 1 cut(s) 336
HapII CCGG 5 cut(s) 117, 260, 295, 333, 436
HgaI GACGC 3 cut(s) 335, 396, 444
Hin1I GRCGYC 3 cut(s) 327, 407, 455
Hin1II CATG 3 cut(s) 45, 149, 165
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 3 cut(s) 206, 248, 304
HpaII CCGG 5 cut(s) 117, 260, 295, 333, 436
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 2 cut(s) 211, 496
Hpy188III TCNNGA 3 cut(s) 64, 190, 203
Hpy8I GTNNAC 1 cut(s) 411
Hpy99I CGWCG 3 cut(s) 329, 406, 412
HpyCH4III ACNGT 3 cut(s) 105, 428, 488
HpyCH4IV ACGT 2 cut(s) 87, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 4 cut(s) 14, 152, 385, 495
HpySE526I ACGT 2 cut(s) 87, 467
Hsp92I GRCGYC 3 cut(s) 327, 407, 455
Hsp92II CATG 3 cut(s) 45, 149, 165
KroI GCCGGC 2 cut(s) 332, 435
KroNI GCCGGC 2 cut(s) 334, 437
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 9 cut(s) 11, 49, 130, 216, 273, 308, 346, 399, 449
LweI GCATC 1 cut(s) 237
MaeI CTAG 2 cut(s) 53, 318
MaeII ACGT 2 cut(s) 87, 467
MalI GATC 7 cut(s) 62, 68, 98, 125, 194, 451, 501
MboI GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
MboII GAAGA 6 cut(s) 29, 243, 277, 310, 313, 401
MflI RGATCY 2 cut(s) 123, 499
MhlI GDGCHC 3 cut(s) 52, 216, 426
MluCI AATT 2 cut(s) 342, 505
MnlI CCTC 7 cut(s) 85, 137, 215, 300, 349, 486, 490
MreI CGCCGGCG 1 cut(s) 435
MroNI GCCGGC 2 cut(s) 332, 435
MseI TTAA 3 cut(s) 345, 504, 508
MspI CCGG 5 cut(s) 117, 260, 295, 333, 436
MwoI GCNNNNNNNGC 1 cut(s) 329
NaeI GCCGGC 2 cut(s) 334, 437
NdeII GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
NgoMIV GCCGGC 2 cut(s) 332, 435
NlaIII CATG 3 cut(s) 45, 149, 165
NmeAIII GCCGAG 1 cut(s) 362
PacI TTAATTAA 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 407
PdiI GCCGGC 2 cut(s) 334, 437
PfeI GAWTC 3 cut(s) 206, 248, 304
PkrI GCNGC 2 cut(s) 331, 441
PmaCI CACGTG 1 cut(s) 468
PmlI CACGTG 1 cut(s) 468
Ppu21I YACGTR 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 216
PspCI CACGTG 1 cut(s) 468
PsuI RGATCY 2 cut(s) 123, 499
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
SacI GAGCTC 1 cut(s) 216
SalI GTCGAC 1 cut(s) 409
SaqAI TTAA 3 cut(s) 345, 504, 508
SatI GCNGC 2 cut(s) 330, 440
Sau3AI GATC 7 cut(s) 60, 66, 96, 123, 192, 449, 499
ScaI AGTACT 1 cut(s) 383
SduI GDGCHC 3 cut(s) 52, 216, 426
SetI ASST 7 cut(s) 20, 90, 216, 352, 418, 470, 478
SfaNI GCATC 1 cut(s) 237
SgrAI CRCCGGYG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 2 cut(s) 342, 505
SsiI CCGC 5 cut(s) 114, 181, 274, 330, 439
SspMI CTAG 2 cut(s) 53, 318
SstI GAGCTC 1 cut(s) 216
TaaI ACNGT 3 cut(s) 105, 428, 488
TaiI ACGT 2 cut(s) 90, 470
TaqI TCGA 1 cut(s) 410
TasI AATT 2 cut(s) 342, 505
TatI WGTACW 1 cut(s) 381
TauI GCSGC 2 cut(s) 332, 442
TfiI GAWTC 3 cut(s) 206, 248, 304
Tru1I TTAA 3 cut(s) 345, 504, 508
Tru9I TTAA 3 cut(s) 345, 504, 508
TspDTI ATGAA 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 410
XspI CTAG 2 cut(s) 53, 318
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.