Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022933.1

Orthogroup ID

OG0014200

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 376

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022933.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgggcaacagtctaaggtgttgtttggcttgtgttctaccttgtggagctctagacttgatccgaatagtccatttaaacggctacgtagaagaaatcacacatccggtcactgccggcgagatccttgccgccaatccaaatcacttcctgagcaaaccctgttcacaaggcgtcgttcgccgcattttgattctctcgccggagtcggagctcaagcgaggcagcatatacttcttgattccggagtcttcgataccggacagtaagaagaagaacaaaggtagtagcggcgttaagaagtcgtcaaagaagagactaagtagtggtgatgccaatgtctcggagtgtgatcgatacttgacggagatcgtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228

Protein Analysis

125

Amino Acids

13.57

Weight (kDa)

8.97

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06980 AT2G30230
fragaria_vesca	FvH4_3g39820
malus_domestica	MD03G1057000.v1.1 MD11G1058700.v1.1
prunus_persica	Prupe.6G047800_v2.0.a1
pyrus_communis	pycom03g04530 pycom11g04880
rosa_chinensis	RchiOBHm_Chr5g0071711
rosa_laevigata	RLG00000036243
rosa_multiflora	Rmu_sc0022933.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009470
rosa_rugosa	Rorug05G0414300
rosa_samantha	Rh5BG490000 Rh5CG514000 Rh5DG500800
rosa_wichuraiana	Rw5G043710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	3 cut(s)	132, 184, 291
AclWI	GGATC	2 cut(s)	55, 118
AcyI	GRCGYC	1 cut(s)	174
AluBI	AGCT	2 cut(s)	50, 214
AluI	AGCT	2 cut(s)	50, 214
Alw21I	GWGCWC	2 cut(s)	52, 216
Alw26I	GTCTC	2 cut(s)	310, 346
AlwI	GGATC	2 cut(s)	55, 118
Aor13HI	TCCGGA	1 cut(s)	244
ApeKI	GCWGC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	52, 216
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	52, 216
BbvI	GCAGC	1 cut(s)	237
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcoDI	GTCTC	2 cut(s)	310, 346
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	4 cut(s)	132, 184, 226, 292
BlsI	GCNGC	4 cut(s)	133, 185, 227, 293
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	355
BsaAI	YACGTR	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	174
BsaWI	WCCGGW	3 cut(s)	106, 244, 259
Bse118I	RCCGGY	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	355
BseGI	GGATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	52, 216
BsiSI	CCGG	5 cut(s)	107, 117, 203, 245, 260
BsmAI	GTCTC	2 cut(s)	310, 346
Bsp1286I	GDGCHC	2 cut(s)	52, 216
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	60, 123, 352, 369
BspACI	CCGC	3 cut(s)	132, 184, 291
BspCNI	CTCAG	1 cut(s)	144
BspDI	ATCGAT	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	244
BspPI	GGATC	2 cut(s)	55, 118
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	4 cut(s)	60, 123, 352, 369
BssNI	GRCGYC	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	11, 266
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	14, 152, 320
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	4 cut(s)	63, 126, 355, 372
BstMAI	GTCTC	2 cut(s)	310, 346
BstMBI	GATC	4 cut(s)	60, 123, 352, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstSNI	TACGTA	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	355
BsuTUI	ATCGAT	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	116
ClaI	ATCGAT	1 cut(s)	355
CseI	GACGC	1 cut(s)	163
CviJI	RGCY	4 cut(s)	29, 50, 84, 214
CviKI_1	RGCY	4 cut(s)	29, 50, 84, 214
DdeI	CTNAG	3 cut(s)	14, 152, 320
DpnI	GATC	4 cut(s)	62, 125, 354, 371
DpnII	GATC	4 cut(s)	60, 123, 352, 369
DraI	TTTAAA	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	2 cut(s)	50, 214
Eco105I	TACGTA	1 cut(s)	88
Eco24I	GRGCYC	2 cut(s)	52, 216
Eco53kI	GAGCTC	2 cut(s)	50, 214
EcoICRI	GAGCTC	2 cut(s)	50, 214
EcoT38I	GRGCYC	2 cut(s)	52, 216
FaiI	YATR	2 cut(s)	230, 232
Fnu4HI	GCNGC	4 cut(s)	132, 184, 226, 292
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	2 cut(s)	52, 216
Fsp4HI	GCNGC	4 cut(s)	132, 184, 226, 292
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	4 cut(s)	132, 184, 226, 292
HapII	CCGG	5 cut(s)	107, 117, 203, 245, 260
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	174
HinfI	GANTC	4 cut(s)	193, 206, 241, 248
HpaII	CCGG	5 cut(s)	107, 117, 203, 245, 260
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	65, 211, 346
Hpy188III	TCNNGA	4 cut(s)	53, 151, 238, 245
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	11, 266
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	3 cut(s)	14, 152, 320
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	174
Kpn2I	TCCGGA	1 cut(s)	244
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	60, 123, 352, 369
LmnI	GCTCC	2 cut(s)	47, 211
LpnPI	CCDG	7 cut(s)	120, 130, 164, 175, 216, 258, 273
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	62, 125, 354, 371
MboI	GATC	4 cut(s)	60, 123, 352, 369
MboII	GAAGA	5 cut(s)	104, 243, 283, 286, 325
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	52, 216
MlyI	GAGTC	2 cut(s)	215, 257
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	1 cut(s)	215
MroI	TCCGGA	1 cut(s)	244
MroNI	GCCGGC	1 cut(s)	116
MseI	TTAA	2 cut(s)	77, 297
MspI	CCGG	5 cut(s)	107, 117, 203, 245, 260
MwoI	GCNNNNNNNGC	1 cut(s)	180
NaeI	GCCGGC	1 cut(s)	118
NdeII	GATC	4 cut(s)	60, 123, 352, 369
NgoMIV	GCCGGC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	193, 241
PkrI	GCNGC	4 cut(s)	133, 185, 227, 293
PleI	GAGTC	2 cut(s)	214, 256
PpsI	GAGTC	2 cut(s)	214, 256
Ppu21I	YACGTR	1 cut(s)	88
Psp124BI	GAGCTC	2 cut(s)	52, 216
PsuI	RGATCY	1 cut(s)	123
SacI	GAGCTC	2 cut(s)	52, 216
SaqAI	TTAA	2 cut(s)	77, 297
SatI	GCNGC	4 cut(s)	132, 184, 226, 292
Sau3AI	GATC	4 cut(s)	60, 123, 352, 369
SchI	GAGTC	2 cut(s)	215, 257
SduI	GDGCHC	2 cut(s)	52, 216
SetI	ASST	6 cut(s)	20, 43, 52, 90, 216, 286
SfaNI	GCATC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SnaBI	TACGTA	1 cut(s)	88
SsiI	CCGC	3 cut(s)	132, 184, 291
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	2 cut(s)	52, 216
TaaI	ACNGT	2 cut(s)	11, 266
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	254, 355
TauI	GCSGC	3 cut(s)	134, 186, 294
TfiI	GAWTC	2 cut(s)	193, 241
Tru1I	TTAA	2 cut(s)	77, 297
Tru9I	TTAA	2 cut(s)	77, 297
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	109
TspRI	CASTG	1 cut(s)	118
XbaI	TCTAGA	1 cut(s)	52
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.