AT1G07050

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013042
Physical Location & Seq
Reverse (-)
2163575 .. 2165261
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07050.1

Sequence Viewer

Length: 588 bp
ATGGATACACAAAGGTTGCCGAAGAAAGAAGAAGAAGAAGAAGAAGATCATCTACTTTCTTCAACCTTCGAGTCCATCAATGGTCACTCTCGAGACCAACACAATCATTCTATAGATGATTTCGAGAGCATTTTCGACATCACCATTGACAATTTAAGCTGCTCTAACGAACTCACGTGGGATTTCTGGGAAGAAGACGAAGATGAAGATGTAGGGGAAGAAGAAAAAAGATCGAGTACTGATCAAGAAGGCTCAAGTTTTGGGTTTTGGGAGAATAAGCCGACGGATTATGAAGACAAAGACTTGGGTCTGAAGCTGAATCTGAACCATCAAGAAGTTATCGATGCTTGGTCTGATCACCAGAAACCTCTGTGGACAGATACTTCAACTCTGGACAATTCCGTTTATAGGGGAGAAGTGCCAGTGATAGAGGAGAAGAGAAACATGCGAAGAGAAGCAAGTGTGTTAAGGTACAAAGAGAAAAGACAGAGTAGGCTCTTCTCTAAGAAGATAAGGTACCAAGTCCGAAAACTCAACGCAGATAAACGACCTCGTTTTAAGGGTCGGTTCGTGAAAAGAGAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

195

Amino Acids

23.32

Weight (kDa)

4.95

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 151 - 193 4.8e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07050 AT1G07050
fragaria_vesca FvH4_3g39550
malus_domestica MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis pycom11g05280
rosa_chinensis RchiOBHm_Chr5g0071321
rosa_laevigata RLG00000036202
rosa_multiflora Rmu_sc0006990.1_g000005
rosa_roxburghii Rroxscaffold_1G00009810
rosa_rugosa Rorug05G0411300
rosa_samantha Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana Rw5G043450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 332
AcvI CACGTG 1 cut(s) 177
AfaI GTAC 3 cut(s) 238, 473, 518
AfiI CCNNNNNNNGG 1 cut(s) 408
AgsI TTSAA 2 cut(s) 63, 387
AluBI AGCT 2 cut(s) 159, 316
AluI AGCT 2 cut(s) 159, 316
Alw26I GTCTC 2 cut(s) 87, 575
Ama87I CYCGRG 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 159
Asp718I GGTACC 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 133, 350
AvaI CYCGRG 1 cut(s) 90
BanI GGYRCC 1 cut(s) 516
BarI GAAGNNNNNNTAC 4 cut(s) 36, 68, 500, 532
BbrPI CACGTG 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 201, 300
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 83, 336
BclI TGATCA 2 cut(s) 241, 355
BcoDI GTCTC 2 cut(s) 87, 575
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
BmcAI AGTACT 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 518
BmsI GCATC 1 cut(s) 334
BoxI GACNNNNGTC 1 cut(s) 306
BpiI GAAGAC 2 cut(s) 201, 300
BpuEI CTTGAG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 342
BseLI CCNNNNNNNGG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 516
BshVI ATCGAT 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 2 cut(s) 87, 575
Bso31I GGTCTC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 4 cut(s) 46, 230, 241, 355
BspDI ATCGAT 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 518
BspQI GCTCTTC 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 516
BspTNI GGTCTC 1 cut(s) 87
BsrI ACTGG 1 cut(s) 422
BssMI GATC 4 cut(s) 46, 230, 241, 355
Bst6I CTCTTC 3 cut(s) 431, 445, 503
BstBAI YACGTR 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 504
BstKTI GATC 4 cut(s) 49, 233, 244, 358
BstMAI GTCTC 2 cut(s) 87, 575
BstMBI GATC 4 cut(s) 46, 230, 241, 355
BstNSI RCATGY 1 cut(s) 448
BstPAI GACNNNNGTC 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 2 cut(s) 201, 300
Bsu15I ATCGAT 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 429
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 3 cut(s) 237, 472, 517
CviAII CATG 1 cut(s) 445
CviJI RGCY 5 cut(s) 159, 252, 280, 316, 496
CviKI_1 RGCY 5 cut(s) 159, 252, 280, 316, 496
CviQI GTAC 3 cut(s) 237, 472, 517
DdeI CTNAG 1 cut(s) 504
DpnI GATC 4 cut(s) 48, 232, 243, 357
DpnII GATC 4 cut(s) 46, 230, 241, 355
Eam1104I CTCTTC 3 cut(s) 431, 445, 503
EarI CTCTTC 3 cut(s) 431, 445, 503
Eco31I GGTCTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 332
Eco72I CACGTG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 90
FaeI CATG 1 cut(s) 448
FaiI YATR 4 cut(s) 113, 291, 408, 446
FalI AAGNNNNNCTT 1 cut(s) 568
FatI CATG 1 cut(s) 444
FbaI TGATCA 2 cut(s) 241, 355
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 448
HinfI GANTC 2 cut(s) 71, 319
HphI GGTGA 2 cut(s) 133, 350
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 4 cut(s) 312, 324, 355, 527
Hpy188III TCNNGA 7 cut(s) 90, 92, 124, 245, 332, 392, 571
Hpy8I GTNNAC 1 cut(s) 375
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 76, 242
HpyCH4IV ACGT 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 1 cut(s) 448
KpnI GGTACC 1 cut(s) 520
Ksp22I TGATCA 2 cut(s) 241, 355
Kzo9I GATC 4 cut(s) 46, 230, 241, 355
LguI GCTCTTC 1 cut(s) 503
LpnPI CCDG 4 cut(s) 172, 374, 377, 435
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 334
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 83
MalI GATC 4 cut(s) 48, 232, 243, 357
MboI GATC 4 cut(s) 46, 230, 241, 355
MluCI AATT 2 cut(s) 151, 397
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 3 cut(s) 378, 424, 561
MseI TTAA 4 cut(s) 155, 467, 558, 586
NdeII GATC 4 cut(s) 46, 230, 241, 355
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 1 cut(s) 518
NmuCI GTSAC 1 cut(s) 83
NspI RCATGY 1 cut(s) 448
PaeR7I CTCGAG 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 503
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 1 cut(s) 161
PleI GAGTC 1 cut(s) 79
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
PpsI GAGTC 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 306
PspCI CACGTG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 518
RsaI GTAC 3 cut(s) 238, 473, 518
RsaNI GTAC 3 cut(s) 237, 472, 517
SapI GCTCTTC 1 cut(s) 503
SaqAI TTAA 4 cut(s) 155, 467, 558, 586
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 4 cut(s) 46, 230, 241, 355
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 80
SetI ASST 9 cut(s) 17, 68, 161, 179, 318, 370, 473, 518, 553
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 90
SlaI CTCGAG 1 cut(s) 90
SmlI CTYRAG 2 cut(s) 90, 253
SmoI CTYRAG 2 cut(s) 90, 253
Sse9I AATT 2 cut(s) 151, 397
TaiI ACGT 1 cut(s) 179
TaqI TCGA 6 cut(s) 69, 91, 123, 135, 233, 342
TasI AATT 2 cut(s) 151, 397
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 4 cut(s) 155, 467, 558, 586
Tru9I TTAA 4 cut(s) 155, 467, 558, 586
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 219, 306
TspGWI ACGGA 2 cut(s) 299, 391
TspRI CASTG 1 cut(s) 429
XceI RCATGY 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.