Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013042

Physical Location & Seq

Genomic Coordinates Forward (+)

33613812 .. 33615565

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGGTACCATTCGTTCTTAAGAAGTCCAAAGAAGGAGGAACAGCAGGTCCCGGATAGTGCAAATTCTTCTGAGGAATTCTCTGACACTACCAAAGATGGTTATGTCAATGGTAAGGTTGATATCATGGATGACTTGGAGCGAATTTGGGGGATTGATGAAGATGGAGACGAAGAGGACGATGAGAAGCCACAGAAGAATCACAACATGTTTGCTGGTCAGGAACTTAACTGGGATTTCATGGATTGGGATGAGTTTCCTAATGGTGAGGAAGGGGATGGAGAGGTAGAGAATGAAGTGTTTGGTGATTCAGAGAGGTGCTTTTTCGAAGAGGAAAGCTACTGTAAGAAGGTTGTGAAGAAAGAGAGCAGTACTGTTGGGTTTTGGAATGATGATGAGGATATGAAGAAGGTGCAATTGAATTTGAACTTGAATTATCAAGAAGTATTGGATGCTTGGTCTGATCGTGGCTCTCTTTGGGCTGAGGATTGTTCATCGCATTCTTCCATGGCTGCTAGCAATGGCAATTATATGGGAGAGGTTCCAGTAATGGAAGAAGAGAAAAGTATAAGAAGGGAGGCAAGTGTTCTGAGGTACAGAGAGAAACGCCAGTCTAGACTCTTCTCCAAGAAGATAAGGTACCAAGTCCGCAAGCTCAATGCAGATAAAAGACCTAGACTCAAGGGTCGATTTGTGAAGAGAGTTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

237

Amino Acids

27.71

Weight (kDa)

4.78

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	192 - 234	3.4e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07050 AT1G07050
fragaria_vesca	FvH4_3g39550
malus_domestica	MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica	Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis	pycom11g05280
rosa_chinensis	RchiOBHm_Chr5g0071321
rosa_laevigata	RLG00000036202
rosa_multiflora	Rmu_sc0006990.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009810
rosa_rugosa	Rorug05G0411300
rosa_samantha	Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana	Rw5G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	684
Acc36I	ACCTGC	1 cut(s)	37
Acc65I	GGTACC	2 cut(s)	6, 639
AccB1I	GGYRCC	2 cut(s)	6, 639
AciI	CCGC	1 cut(s)	649
AcsI	RAATTY	4 cut(s)	64, 77, 144, 421
AfaI	GTAC	4 cut(s)	8, 373, 596, 641
AflII	CTTAAG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	421, 427, 433
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	339, 655
AluI	AGCT	2 cut(s)	339, 655
Alw26I	GTCTC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	4 cut(s)	64, 77, 144, 421
Asp718I	GGTACC	2 cut(s)	6, 639
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	278, 317
AsuII	TTCGAA	1 cut(s)	327
AsuNHI	GCTAGC	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	6, 639
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	92, 158, 272
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	3 cut(s)	516, 615, 675
BfrI	CTTAAG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
BmcAI	AGTACT	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	8, 51, 543, 641
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	442
BmtI	GCTAGC	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	507
Bse1I	ACTGG	3 cut(s)	236, 545, 610
Bse3DI	GCAATG	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	4 cut(s)	136, 256, 283, 457
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	3 cut(s)	63, 474, 581
BseNI	ACTGG	3 cut(s)	236, 545, 610
BseXI	GCAGC	1 cut(s)	499
BshNI	GGYRCC	2 cut(s)	6, 639
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	162
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	1 cut(s)	649
BspCNI	CTCAG	3 cut(s)	64, 475, 582
BspLI	GGNNCC	4 cut(s)	8, 51, 543, 641
BspMI	ACCTGC	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	327
BspT107I	GGYRCC	2 cut(s)	6, 639
BspTI	CTTAAG	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	526
BsrI	ACTGG	3 cut(s)	236, 545, 610
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	344, 376
Bst6I	CTCTTC	5 cut(s)	168, 324, 552, 626, 692
BstAFI	CTTAAG	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	517, 653
BstDEI	CTNAG	3 cut(s)	72, 483, 590
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	4 cut(s)	136, 256, 283, 457
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	499
BtgI	CCRYGG	1 cut(s)	507
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	4 cut(s)	136, 256, 283, 457
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	517, 653
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	7, 372, 595, 640
CviAII	CATG	4 cut(s)	127, 208, 241, 508
CviJI	RGCY	6 cut(s)	190, 339, 471, 482, 512, 655
CviKI_1	RGCY	6 cut(s)	190, 339, 471, 482, 512, 655
CviQI	GTAC	4 cut(s)	7, 372, 595, 640
DdeI	CTNAG	3 cut(s)	72, 483, 590
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
DrdI	GACNNNNNNGTC	1 cut(s)	684
DseDI	GACNNNNNNGTC	1 cut(s)	684
Eam1104I	CTCTTC	5 cut(s)	168, 324, 552, 626, 692
EarI	CTCTTC	5 cut(s)	168, 324, 552, 626, 692
Eco130I	CCWWGG	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	4 cut(s)	130, 211, 244, 511
FaiI	YATR	9 cut(s)	105, 128, 209, 242, 404, 509, 531, 533, 569
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	4 cut(s)	126, 207, 240, 507
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	4 cut(s)	143, 263, 290, 464
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	3 cut(s)	516, 615, 675
GluI	GCNGC	1 cut(s)	513
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	4 cut(s)	130, 211, 244, 511
HinfI	GANTC	4 cut(s)	199, 308, 618, 678
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	278, 317
Hpy188I	TCNGA	5 cut(s)	73, 85, 313, 463, 591
Hpy188III	TCNNGA	4 cut(s)	221, 440, 615, 708
HpyAV	CCTTC	5 cut(s)	28, 266, 343, 403, 567
HpyCH4III	ACNGT	2 cut(s)	344, 376
HpyCH4V	TGCA	3 cut(s)	62, 415, 662
HpyF3I	CTNAG	3 cut(s)	72, 483, 590
Hsp92II	CATG	4 cut(s)	130, 211, 244, 511
KpnI	GGTACC	2 cut(s)	10, 643
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	7 cut(s)	32, 66, 201, 206, 217, 558, 623
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	516, 615, 675
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MfeI	CAATTG	1 cut(s)	416
MluCI	AATT	7 cut(s)	64, 77, 144, 416, 421, 433, 526
MlyI	GAGTC	2 cut(s)	612, 672
MseI	TTAA	2 cut(s)	20, 228
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	499
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	1 cut(s)	463
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	4 cut(s)	130, 211, 244, 511
NlaIV	GGNNCC	4 cut(s)	8, 51, 543, 641
NspI	RCATGY	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	199, 308
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	2 cut(s)	612, 672
PpsI	GAGTC	2 cut(s)	612, 672
PpuMI	RGGWCCY	1 cut(s)	49
PscI	ACATGT	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	8, 51, 543, 641
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PsrI	GAACNNNNNNTAC	1 cut(s)	31
RsaI	GTAC	4 cut(s)	8, 373, 596, 641
RsaNI	GTAC	4 cut(s)	7, 372, 595, 640
SaqAI	TTAA	2 cut(s)	20, 228
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	373
SchI	GAGTC	2 cut(s)	612, 672
ScrFI	CCNGG	1 cut(s)	53
SfaNI	GCATC	1 cut(s)	442
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	19, 680
SmoI	CTYRAG	2 cut(s)	19, 680
Sse9I	AATT	7 cut(s)	64, 77, 144, 416, 421, 433, 526
SsiI	CCGC	1 cut(s)	649
SspMI	CTAG	3 cut(s)	516, 615, 675
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	344, 376
TaqI	TCGA	2 cut(s)	327, 688
TasI	AATT	7 cut(s)	64, 77, 144, 416, 421, 433, 526
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	199, 308
Tru1I	TTAA	2 cut(s)	20, 228
Tru9I	TTAA	2 cut(s)	20, 228
TseI	GCWGC	1 cut(s)	512
TspDTI	ATGAA	5 cut(s)	174, 229, 309, 419, 483
Vha464I	CTTAAG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	4 cut(s)	64, 77, 144, 421
XbaI	TCTAGA	1 cut(s)	614
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	3 cut(s)	516, 615, 675
ZrmI	AGTACT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.