Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013042

Physical Location & Seq

Genomic Coordinates Forward (+)

78122439 .. 78124372

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG497400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGGTACCATTCATTCTTAAGAAGCCCAAAGAAGGAGGAGCAGCAGGTGCCGGACAGTGCTAATTCTTCCGAGGATTTCTCTGACACTACCAAAGATGGTTATGTCAATGGAGAGGTTGATATCATGGATGACTTGGAGCGCATTTGGGGGATCGAAGATGGAGACGAAGACTATGAGAAGCTACCGAAGGGTCACAACATGTTTACTGGTCAGGAACTTAATTGGGATTTCATGGATTGGGATGAGTTTCCTAATGGTGAAGAAGGGGATGGAGAGGTAGAGAATGAAGTGTTTGGTGATTCAGCTGAGAGGTGCTTTTTCGAAGAGGAAAGCTACTGTAAGAAGGTTGTGAAGAGAGAGAGTAGTACTGTTGGGTTTTGGGATGATGATGAGGATATGAAGAAGGTGCAATTGAACTTGAACTTGAATTATCAAGAGGTATTGGATGCTTGGTCTGATCGTGGTTCTCTTTGGGCTGAGGATTGTTCATCACATTCTTCCAAGGCTGCTAGCATTGGCAATTATGTTAGTACTACTACTCCATTGATTTCTCATTTCATTCTCCACTTTTTTTACCTTTTCACTTTCATATTTTCCCCAATTTCAAAATGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

206

Amino Acids

23.84

Weight (kDa)

4.28

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07050 AT1G07050
fragaria_vesca	FvH4_3g39550
malus_domestica	MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica	Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis	pycom11g05280
rosa_chinensis	RchiOBHm_Chr5g0071321
rosa_laevigata	RLG00000036202
rosa_multiflora	Rmu_sc0006990.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009810
rosa_rugosa	Rorug05G0411300
rosa_samantha	Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana	Rw5G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc36I	ACCTGC	1 cut(s)	37
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	2 cut(s)	6, 49
AclWI	GGATC	1 cut(s)	161
AfaI	GTAC	3 cut(s)	8, 370, 535
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflII	CTTAAG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	4 cut(s)	418, 424, 430, 609
AluBI	AGCT	3 cut(s)	184, 308, 336
AluI	AGCT	3 cut(s)	184, 308, 336
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	43, 509
Asp718I	GGTACC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	272, 311
AsuII	TTCGAA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	512
BanI	GGYRCC	2 cut(s)	6, 49
BbsI	GAAGAC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	55, 496
BccI	CCATC	3 cut(s)	92, 155, 266
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	44, 510
BlsI	GCNGC	2 cut(s)	45, 511
BmcAI	AGTACT	2 cut(s)	370, 535
BmiI	GGNNCC	2 cut(s)	8, 51
BmsI	GCATC	1 cut(s)	439
BmtI	GCTAGC	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	72, 504
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	72, 504
BseGI	GGATG	5 cut(s)	136, 250, 277, 391, 454
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	300, 471
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	55, 496
BshNI	GGYRCC	2 cut(s)	6, 49
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	153, 460
BspCNI	CTCAG	2 cut(s)	301, 472
BspLI	GGNNCC	2 cut(s)	8, 51
BspMI	ACCTGC	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	2 cut(s)	6, 49
BspTI	CTTAAG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	72, 504
BssMI	GATC	2 cut(s)	153, 460
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	59, 341, 373
Bst6I	CTCTTC	2 cut(s)	321, 350
BstAFI	CTTAAG	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	514
BstDEI	CTNAG	3 cut(s)	309, 480, 618
BstF5I	GGATG	5 cut(s)	136, 250, 277, 391, 454
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	156, 463
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	153, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	55, 496
BstV2I	GAAGAC	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	136, 250, 277, 391, 454
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	514
CfoI	GCGC	1 cut(s)	144
Csp6I	GTAC	3 cut(s)	7, 369, 534
CviAII	CATG	3 cut(s)	127, 202, 235
CviJI	RGCY	6 cut(s)	27, 184, 308, 336, 479, 509
CviKI_1	RGCY	6 cut(s)	27, 184, 308, 336, 479, 509
CviQI	GTAC	3 cut(s)	7, 369, 534
DdeI	CTNAG	3 cut(s)	309, 480, 618
DpnI	GATC	2 cut(s)	155, 462
DpnII	GATC	2 cut(s)	153, 460
Eam1104I	CTCTTC	2 cut(s)	321, 350
EarI	CTCTTC	2 cut(s)	321, 350
Eco130I	CCWWGG	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	3 cut(s)	130, 205, 238
FaiI	YATR	8 cut(s)	105, 128, 177, 203, 236, 401, 528, 593
FatI	CATG	3 cut(s)	126, 201, 234
Fnu4HI	GCNGC	2 cut(s)	44, 510
FokI	GGATG	5 cut(s)	143, 257, 284, 398, 461
Fsp4HI	GCNGC	2 cut(s)	44, 510
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	44, 510
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	130, 205, 238
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	272, 311
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	73, 85, 460
Hpy188III	TCNNGA	2 cut(s)	215, 437
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	5 cut(s)	28, 184, 260, 340, 400
HpyCH4III	ACNGT	3 cut(s)	59, 341, 373
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	3 cut(s)	309, 480, 618
Hsp92II	CATG	3 cut(s)	130, 205, 238
HspAI	GCGC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	153, 460
LmnI	GCTCC	2 cut(s)	40, 139
LpnPI	CCDG	4 cut(s)	32, 66, 195, 200
Lsp1109I	GCAGC	2 cut(s)	55, 496
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	155, 462
MboI	GATC	2 cut(s)	153, 460
MboII	GAAGA	8 cut(s)	60, 170, 182, 275, 338, 367, 415, 492
MfeI	CAATTG	1 cut(s)	413
MluCI	AATT	6 cut(s)	64, 223, 413, 430, 523, 603
MnlI	CCTC	9 cut(s)	31, 67, 109, 271, 306, 322, 388, 433, 475
MseI	TTAA	2 cut(s)	20, 222
MspA1I	CMGCKG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	153, 460
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	130, 205, 238
NlaIV	GGNNCC	2 cut(s)	8, 51
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	37
PciI	ACATGT	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	45, 511
PscI	ACATGT	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	8, 51
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	8, 370, 535
RsaNI	GTAC	3 cut(s)	7, 369, 534
SaqAI	TTAA	2 cut(s)	20, 222
SatI	GCNGC	2 cut(s)	44, 510
Sau3AI	GATC	2 cut(s)	153, 460
ScaI	AGTACT	2 cut(s)	370, 535
SfaNI	GCATC	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	6 cut(s)	64, 223, 413, 430, 523, 603
SspMI	CTAG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	59, 341, 373
TaqI	TCGA	2 cut(s)	156, 324
TasI	AATT	6 cut(s)	64, 223, 413, 430, 523, 603
TatI	WGTACW	2 cut(s)	368, 533
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	20, 222
Tru9I	TTAA	2 cut(s)	20, 222
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	43, 509
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	6 cut(s)	223, 303, 416, 480, 550, 580
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	19
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	1 cut(s)	513
ZrmI	AGTACT	2 cut(s)	370, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.