Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013042

Physical Location & Seq

Genomic Coordinates Reverse (-)

12328133 .. 12330055

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGGTACCATTCATTCTTAAGAAGCCCAAAGAAGGAGGAGCAGCAGGTGCCGGACAGTGCTAATTCTTCCGAGGATTTCTCTGACACTACCAAAGATGGTTATGTCAATGGAGAGGTTGATATCATGGATGACTTGGAGCGCATTTGGGGGATCGAAGATGGAGACGAAAACGATGAGAAGCTACCGAAGGGTCACAACATGTTTACTGGACAGGAACTTAATTGGGATTTCATGGATTGGGATGAGTTTCCTAATGGTGAAGAAGGGGATGGAGAGGTAGAGAATGAAGTGTTCGGTGATTCAGCTGAGAGGTGCTTTTTCGAAGAGGAAAGCTACTGTAAGAAGGTTGTGAAGAGAGAGAGTAGTACTGTTGGGTTTTGGGATGATGATGAGGATATGAAGAAGGTGCAATTGAATTTGAACTTGAATTATCAAGAGGTATTGGATGCTTGGTCTGATCGTGGTTCTCTTTGGGCTGAGGATTGTTCATCACATTCTTCCAAGGCTGCTAGCATTCGCAATTATATGGGAGAGGTGCCAGTAATGGAAGAAGAGAAAAGTACAAGAAGGGAGGCAAGTGTTCTGAGGTACAAAGAGAAACGTCAGTCTAGACTCTTCTCCAAGAAGATAAGGTACCAAGTCCGCAAGCTCAATGCAGATAAAAGACCTAGACTCAAGGGTCGATTTGTGAAGAGAGTTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

235

Amino Acids

27.56

Weight (kDa)

4.86

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	191 - 233	2.9e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07050 AT1G07050
fragaria_vesca	FvH4_3g39550
malus_domestica	MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica	Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis	pycom11g05280
rosa_chinensis	RchiOBHm_Chr5g0071321
rosa_laevigata	RLG00000036202
rosa_multiflora	Rmu_sc0006990.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009810
rosa_rugosa	Rorug05G0411300
rosa_samantha	Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana	Rw5G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
AasI	GACNNNNNNGTC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	37
Acc65I	GGTACC	2 cut(s)	6, 636
AccB1I	GGYRCC	4 cut(s)	6, 49, 538, 636
AciI	CCGC	1 cut(s)	646
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	5 cut(s)	8, 370, 565, 593, 638
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflII	CTTAAG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	418, 424, 430
AluBI	AGCT	4 cut(s)	184, 308, 336, 652
AluI	AGCT	4 cut(s)	184, 308, 336, 652
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	161
ApeKI	GCWGC	2 cut(s)	43, 509
ApoI	RAATTY	1 cut(s)	418
Asp718I	GGTACC	2 cut(s)	6, 636
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	272, 311
AsuII	TTCGAA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	512
BanI	GGYRCC	4 cut(s)	6, 49, 538, 636
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	55, 496
BccI	CCATC	3 cut(s)	92, 155, 266
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	3 cut(s)	513, 612, 672
BfrI	CTTAAG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	44, 510
BlsI	GCNGC	2 cut(s)	45, 511
BmcAI	AGTACT	1 cut(s)	370
BmiI	GGNNCC	4 cut(s)	8, 51, 540, 638
BmsI	GCATC	1 cut(s)	439
BmtI	GCTAGC	1 cut(s)	516
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	72, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	214, 542
BseDI	CCNNGG	2 cut(s)	72, 504
BseGI	GGATG	5 cut(s)	136, 250, 277, 391, 454
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	3 cut(s)	300, 471, 578
BseNI	ACTGG	2 cut(s)	214, 542
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	55, 496
BshNI	GGYRCC	4 cut(s)	6, 49, 538, 636
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	516
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	153, 460
BspACI	CCGC	1 cut(s)	646
BspCNI	CTCAG	3 cut(s)	301, 472, 579
BspLI	GGNNCC	4 cut(s)	8, 51, 540, 638
BspMI	ACCTGC	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	4 cut(s)	6, 49, 538, 636
BspTI	CTTAAG	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	214, 542
BssECI	CCNNGG	2 cut(s)	72, 504
BssMI	GATC	2 cut(s)	153, 460
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	59, 341, 373
Bst6I	CTCTTC	5 cut(s)	321, 350, 549, 623, 689
BstAFI	CTTAAG	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	514, 650
BstDEI	CTNAG	3 cut(s)	309, 480, 587
BstF5I	GGATG	5 cut(s)	136, 250, 277, 391, 454
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	156, 463
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	153, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	55, 496
BtsCI	GGATG	5 cut(s)	136, 250, 277, 391, 454
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	514, 650
CfoI	GCGC	1 cut(s)	144
Csp6I	GTAC	5 cut(s)	7, 369, 564, 592, 637
CviAII	CATG	3 cut(s)	127, 202, 235
CviJI	RGCY	7 cut(s)	27, 184, 308, 336, 479, 509, 652
CviKI_1	RGCY	7 cut(s)	27, 184, 308, 336, 479, 509, 652
CviQI	GTAC	5 cut(s)	7, 369, 564, 592, 637
DdeI	CTNAG	3 cut(s)	309, 480, 587
DpnI	GATC	2 cut(s)	155, 462
DpnII	GATC	2 cut(s)	153, 460
DrdI	GACNNNNNNGTC	1 cut(s)	681
DseDI	GACNNNNNNGTC	1 cut(s)	681
Eam1104I	CTCTTC	5 cut(s)	321, 350, 549, 623, 689
EarI	CTCTTC	5 cut(s)	321, 350, 549, 623, 689
Eco130I	CCWWGG	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	3 cut(s)	130, 205, 238
FaiI	YATR	7 cut(s)	105, 128, 203, 236, 401, 528, 530
FatI	CATG	3 cut(s)	126, 201, 234
Fnu4HI	GCNGC	2 cut(s)	44, 510
FokI	GGATG	5 cut(s)	143, 257, 284, 398, 461
Fsp4HI	GCNGC	2 cut(s)	44, 510
FspBI	CTAG	3 cut(s)	513, 612, 672
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	44, 510
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	130, 205, 238
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	302, 615, 675
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	272, 311
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	4 cut(s)	73, 85, 460, 588
Hpy188III	TCNNGA	3 cut(s)	437, 612, 705
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	6 cut(s)	28, 184, 260, 340, 400, 564
HpyCH4III	ACNGT	3 cut(s)	59, 341, 373
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	2 cut(s)	412, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	3 cut(s)	309, 480, 587
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	130, 205, 238
HspAI	GCGC	1 cut(s)	142
KpnI	GGTACC	2 cut(s)	10, 640
Kzo9I	GATC	2 cut(s)	153, 460
LmnI	GCTCC	2 cut(s)	40, 139
LpnPI	CCDG	5 cut(s)	32, 66, 195, 200, 555
Lsp1109I	GCAGC	2 cut(s)	55, 496
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	3 cut(s)	513, 612, 672
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	155, 462
MboI	GATC	2 cut(s)	153, 460
MfeI	CAATTG	1 cut(s)	413
MluCI	AATT	6 cut(s)	64, 223, 413, 418, 430, 523
MlyI	GAGTC	2 cut(s)	609, 669
MseI	TTAA	2 cut(s)	20, 222
MspA1I	CMGCKG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	49
NdeII	GATC	2 cut(s)	153, 460
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	130, 205, 238
NlaIV	GGNNCC	4 cut(s)	8, 51, 540, 638
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	37
PciI	ACATGT	1 cut(s)	201
PctI	GAATGC	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	45, 511
PleI	GAGTC	2 cut(s)	609, 669
PpsI	GAGTC	2 cut(s)	609, 669
PscI	ACATGT	1 cut(s)	201
PspN4I	GGNNCC	4 cut(s)	8, 51, 540, 638
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	5 cut(s)	8, 370, 565, 593, 638
RsaNI	GTAC	5 cut(s)	7, 369, 564, 592, 637
SaqAI	TTAA	2 cut(s)	20, 222
SatI	GCNGC	2 cut(s)	44, 510
Sau3AI	GATC	2 cut(s)	153, 460
ScaI	AGTACT	1 cut(s)	370
SchI	GAGTC	2 cut(s)	609, 669
SfaNI	GCATC	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	19, 677
SmoI	CTYRAG	2 cut(s)	19, 677
Sse9I	AATT	6 cut(s)	64, 223, 413, 418, 430, 523
SsiI	CCGC	1 cut(s)	646
SspMI	CTAG	3 cut(s)	513, 612, 672
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	59, 341, 373
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	3 cut(s)	156, 324, 685
TasI	AATT	6 cut(s)	64, 223, 413, 418, 430, 523
TatI	WGTACW	2 cut(s)	368, 563
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	20, 222
Tru9I	TTAA	2 cut(s)	20, 222
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	43, 509
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	223, 303, 416, 480
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	418
XbaI	TCTAGA	1 cut(s)	611
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	3 cut(s)	513, 612, 672
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.