RchiOBHm_Chr5g0071321

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013042
Physical Location & Seq
Forward (+)
77208678 .. 77210278
1601 bp
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UTR
Exon/CDS
Intron
PRQ34642

Sequence Viewer

Length: 696 bp
ATGAGGTACCATTCATTCTTAAGAAGCCCAAAGAAGGAGGAGCAGCAGGTGCCGGACAGTGCTAATTCTTCCGAGGATTTCTCTGACACTACCAAAGATGGTTATGTCAATGGAGAGGTTGATATCATGGATGACTTGGAGCGCATTTGGGGGATCGAAGACGATGAGAAGCTACCGAAGGGTCACAACATGTTTACTGGTCAGGAACTTAACTGGGATTTCATGGATTGGGATGAGTTTCCTAATGGTGAAGAAGGGGATGGAGAGGTAGAGAATGAAGTGTTTGGTGATTCTGCTGAGAGGTGCTTTTTCGAAGAGGAAAGCTACTGTAAGAAGGTTGTGAAGAGAGAGAGTAGTACTGTTGGGTTTTGGGATGATGATGAGGATATGAAGAAGGTGCAATTGAATTTGAACTTGAATTATCAAGAGGTATTGGATGCTTGGTCTGATCGTGGTTCTCTTTGGGCTGAGGATTGTTCATCACATTCTTCCAAGGCTGCTAGCATTGGCAATTATATGGGAGAGGTGCCAGTAATGGAAGAAGAGAAAAGTACAAGAAGGGAGGCAAGTGTTCTGAGGTACAAAGAGAAACGTCAGTCTAGACTCTTCTCCAAGAAGATAAGGTACCAAGTCCGCAAGCTCAATGCAGATAAAAGACCTAGACTCAAGGGTCGATTTGTGAAGAGAGTTTCGTGA

Protein Analysis

231

Amino Acids

27.05

Weight (kDa)

4.89

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 187 - 229 2.8e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07050 AT1G07050
fragaria_vesca FvH4_3g39550
malus_domestica MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis pycom11g05280
rosa_chinensis RchiOBHm_Chr5g0071321
rosa_laevigata RLG00000036202
rosa_multiflora Rmu_sc0006990.1_g000005
rosa_roxburghii Rroxscaffold_1G00009810
rosa_rugosa Rorug05G0411300
rosa_samantha Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana Rw5G043450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
AasI GACNNNNNNGTC 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 37
Acc65I GGTACC 2 cut(s) 6, 624
AccB1I GGYRCC 4 cut(s) 6, 49, 526, 624
AciI CCGC 1 cut(s) 634
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 5 cut(s) 8, 358, 553, 581, 626
AfiI CCNNNNNNNGG 1 cut(s) 34
AflII CTTAAG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 3 cut(s) 406, 412, 418
AluBI AGCT 3 cut(s) 172, 324, 640
AluI AGCT 3 cut(s) 172, 324, 640
AlwI GGATC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 43, 497
ApoI RAATTY 1 cut(s) 406
Asp718I GGTACC 2 cut(s) 6, 624
AspLEI GCGC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 260, 299
AsuII TTCGAA 1 cut(s) 312
AsuNHI GCTAGC 1 cut(s) 500
BanI GGYRCC 4 cut(s) 6, 49, 526, 624
BarI GAAGNNNNNNTAC 2 cut(s) 608, 640
BbsI GAAGAC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 55, 484
BccI CCATC 2 cut(s) 92, 254
BfaI CTAG 3 cut(s) 501, 600, 660
BfrI CTTAAG 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 44, 498
BlsI GCNGC 2 cut(s) 45, 499
BmcAI AGTACT 1 cut(s) 358
BmiI GGNNCC 4 cut(s) 8, 51, 528, 626
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 427
BmtI GCTAGC 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 72, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 202, 218, 530
BseDI CCNNGG 2 cut(s) 72, 492
BseGI GGATG 5 cut(s) 136, 238, 265, 379, 442
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 3 cut(s) 288, 459, 566
BseNI ACTGG 3 cut(s) 202, 218, 530
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 55, 484
BshNI GGYRCC 4 cut(s) 6, 49, 526, 624
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 34
Bsp119I TTCGAA 1 cut(s) 312
Bsp143I GATC 2 cut(s) 153, 448
BspACI CCGC 1 cut(s) 634
BspCNI CTCAG 3 cut(s) 289, 460, 567
BspLI GGNNCC 4 cut(s) 8, 51, 528, 626
BspMI ACCTGC 1 cut(s) 37
BspOI GCTAGC 1 cut(s) 504
BspPI GGATC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 312
BspT107I GGYRCC 4 cut(s) 6, 49, 526, 624
BspTI CTTAAG 1 cut(s) 19
BsrI ACTGG 3 cut(s) 202, 218, 530
BssECI CCNNGG 2 cut(s) 72, 492
BssMI GATC 2 cut(s) 153, 448
BssT1I CCWWGG 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 59, 329, 361
Bst6I CTCTTC 5 cut(s) 309, 338, 537, 611, 677
BstAFI CTTAAG 1 cut(s) 19
BstAPI GCANNNNNTGC 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 502, 638
BstDEI CTNAG 3 cut(s) 297, 468, 575
BstF5I GGATG 5 cut(s) 136, 238, 265, 379, 442
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 2 cut(s) 156, 451
BstMBI GATC 2 cut(s) 153, 448
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 55, 484
BstV2I GAAGAC 1 cut(s) 165
BtsCI GGATG 5 cut(s) 136, 238, 265, 379, 442
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 502, 638
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 5 cut(s) 7, 357, 552, 580, 625
CviAII CATG 3 cut(s) 127, 190, 223
CviJI RGCY 6 cut(s) 27, 172, 324, 467, 497, 640
CviKI_1 RGCY 6 cut(s) 27, 172, 324, 467, 497, 640
CviQI GTAC 5 cut(s) 7, 357, 552, 580, 625
DdeI CTNAG 3 cut(s) 297, 468, 575
DpnI GATC 2 cut(s) 155, 450
DpnII GATC 2 cut(s) 153, 448
DrdI GACNNNNNNGTC 1 cut(s) 669
DseDI GACNNNNNNGTC 1 cut(s) 669
Eam1104I CTCTTC 5 cut(s) 309, 338, 537, 611, 677
EarI CTCTTC 5 cut(s) 309, 338, 537, 611, 677
Eco130I CCWWGG 1 cut(s) 492
Eco32I GATATC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 3 cut(s) 130, 193, 226
FaiI YATR 7 cut(s) 105, 128, 191, 224, 389, 516, 518
FatI CATG 3 cut(s) 126, 189, 222
Fnu4HI GCNGC 2 cut(s) 44, 498
FokI GGATG 5 cut(s) 143, 245, 272, 386, 449
Fsp4HI GCNGC 2 cut(s) 44, 498
FspBI CTAG 3 cut(s) 501, 600, 660
GlaI GCGC 1 cut(s) 143
GluI GCNGC 2 cut(s) 44, 498
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 144
Hin1II CATG 3 cut(s) 130, 193, 226
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 3 cut(s) 290, 603, 663
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 260, 299
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 4 cut(s) 73, 85, 448, 576
Hpy188III TCNNGA 4 cut(s) 203, 425, 600, 693
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 6 cut(s) 28, 172, 248, 328, 388, 552
HpyCH4III ACNGT 3 cut(s) 59, 329, 361
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 2 cut(s) 400, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 3 cut(s) 297, 468, 575
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 3 cut(s) 130, 193, 226
HspAI GCGC 1 cut(s) 142
KpnI GGTACC 2 cut(s) 10, 628
Kzo9I GATC 2 cut(s) 153, 448
LmnI GCTCC 2 cut(s) 40, 139
LpnPI CCDG 6 cut(s) 32, 66, 183, 188, 199, 543
Lsp1109I GCAGC 2 cut(s) 55, 484
LweI GCATC 1 cut(s) 427
MaeI CTAG 3 cut(s) 501, 600, 660
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 155, 450
MboI GATC 2 cut(s) 153, 448
MfeI CAATTG 1 cut(s) 401
MluCI AATT 5 cut(s) 64, 401, 406, 418, 511
MlyI GAGTC 2 cut(s) 597, 657
MseI TTAA 2 cut(s) 20, 210
MspCI CTTAAG 1 cut(s) 19
MspI CCGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 2 cut(s) 153, 448
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 3 cut(s) 130, 193, 226
NlaIV GGNNCC 4 cut(s) 8, 51, 528, 626
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 193
NspV TTCGAA 1 cut(s) 312
PaqCI CACCTGC 1 cut(s) 37
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 45, 499
PleI GAGTC 2 cut(s) 597, 657
PpsI GAGTC 2 cut(s) 597, 657
PscI ACATGT 1 cut(s) 189
PspN4I GGNNCC 4 cut(s) 8, 51, 528, 626
RsaI GTAC 5 cut(s) 8, 358, 553, 581, 626
RsaNI GTAC 5 cut(s) 7, 357, 552, 580, 625
SaqAI TTAA 2 cut(s) 20, 210
SatI GCNGC 2 cut(s) 44, 498
Sau3AI GATC 2 cut(s) 153, 448
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 2 cut(s) 597, 657
SfaNI GCATC 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 19, 665
SmoI CTYRAG 2 cut(s) 19, 665
Sse9I AATT 5 cut(s) 64, 401, 406, 418, 511
SsiI CCGC 1 cut(s) 634
SspMI CTAG 3 cut(s) 501, 600, 660
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 3 cut(s) 59, 329, 361
TaiI ACGT 1 cut(s) 595
TaqI TCGA 3 cut(s) 156, 312, 673
TasI AATT 5 cut(s) 64, 401, 406, 418, 511
TatI WGTACW 2 cut(s) 356, 551
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 2 cut(s) 20, 210
Tru9I TTAA 2 cut(s) 20, 210
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 43, 497
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 211, 291, 404, 468
TspRI CASTG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 19
XapI RAATTY 1 cut(s) 406
XbaI TCTAGA 1 cut(s) 599
XceI RCATGY 1 cut(s) 193
XspI CTAG 3 cut(s) 501, 600, 660
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.