Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0013042

Physical Location & Seq

Genomic Coordinates Reverse (-)

4837363 .. 4839164

Gene Structure 1802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1059900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGGTACCATTCTTTCTTAAGAAGCCTGAAGAAGGAAGAGCAACAAGTTCCGGACAGTACCCATAATTCTGGTGAAGAATTCTCTGACACTAATACTACAAAATTAGATGATGCTTACACCAATGGAGACAATGATCATGAGGTTGATATCATGGATGATTGGGAACAAATTTTGGGAATCAAAGAGGAAGAAGATGGAAAATTACCGAGCGATAACATGTACAGCGGTCACGAGCTCAATTGGGATTTTATGGATTGGGACGAGTTTCCCAATGTAGAAGAAGAAGGGGAGGAGATAGATCAAAAAGTTTATCATGGCACTGATAAGTGCTTCTTTGAAGAGGAGAGCTACTACAAAAAAAATATTGTAAAGTGTGAGAGTATAGGGTTTTGGGATGATGATGATGAGAAGAAGGTGCAGCTGAATTTGAATTTGAATTATCAAGAGGTTATGGATGCTTGGTCTGATCGCGGTACTCTTTGGGCAGATGATTGTTCACTTTCTTCCATGGCTAGCAATGGCAATTATATAGGGGAGGTGCCAGTAATGGAAGAAGAGAAGGCAAGAAGAGAGGCAAGAGTTCTAAGGTACAAGGAGAAACGCCAGTCTAGACTCTTTTCCAAAAAGATAAGGTACCAAGTCCGTAAGCTTAATGCAGATAAAAGACCTAGACTCAAGGGTCGATTTGTGAAGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

235

Amino Acids

27.81

Weight (kDa)

4.81

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	191 - 233	6e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07050 AT1G07050
fragaria_vesca	FvH4_3g39550
malus_domestica	MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica	Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis	pycom11g05280
rosa_chinensis	RchiOBHm_Chr5g0071321
rosa_laevigata	RLG00000036202
rosa_multiflora	Rmu_sc0006990.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009810
rosa_rugosa	Rorug05G0411300
rosa_samantha	Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana	Rw5G043450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	681
Acc65I	GGTACC	2 cut(s)	6, 636
AccB1I	GGYRCC	3 cut(s)	6, 541, 636
AccII	CGCG	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	2 cut(s)	228, 474
AcsI	RAATTY	4 cut(s)	80, 171, 427, 433
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	6 cut(s)	8, 61, 224, 478, 593, 638
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflII	CTTAAG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	341, 433, 439
AluBI	AGCT	4 cut(s)	238, 351, 424, 652
AluI	AGCT	4 cut(s)	238, 351, 424, 652
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	4 cut(s)	80, 171, 427, 433
Asp718I	GGTACC	2 cut(s)	6, 636
AsuHPI	GGTGA	1 cut(s)	86
AsuNHI	GCTAGC	1 cut(s)	515
BanI	GGYRCC	3 cut(s)	6, 541, 636
BanII	GRGCYC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	1 cut(s)	191
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	3 cut(s)	516, 612, 672
BfrI	CTTAAG	1 cut(s)	19
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmiI	GGNNCC	3 cut(s)	8, 543, 638
BmsI	GCATC	2 cut(s)	103, 448
BmtI	GCTAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	662
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	545, 607
Bse3DI	GCAATG	1 cut(s)	526
BseAI	TCCGGA	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	3 cut(s)	163, 403, 463
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	526
BseNI	ACTGG	2 cut(s)	545, 607
BseRI	GAGGAG	2 cut(s)	308, 359
BseXI	GCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	474
BshNI	GGYRCC	3 cut(s)	6, 541, 636
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	136, 301, 469
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	2 cut(s)	228, 474
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	474
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	8, 543, 638
BspOI	GCTAGC	1 cut(s)	519
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	3 cut(s)	6, 541, 636
BspTI	CTTAAG	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	526
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	2 cut(s)	545, 607
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	3 cut(s)	136, 301, 469
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	5 cut(s)	33, 336, 552, 565, 689
BstAFI	CTTAAG	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	1 cut(s)	587
BstDSI	CCRYGG	1 cut(s)	510
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	163, 403, 463
BstFNI	CGCG	1 cut(s)	474
BstKTI	GATC	3 cut(s)	139, 304, 472
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	136, 301, 469
BstNSI	RCATGY	1 cut(s)	223
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	163, 403, 463
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	517
CciI	TCATGA	1 cut(s)	139
Csp6I	GTAC	6 cut(s)	7, 60, 223, 477, 592, 637
CviAII	CATG	5 cut(s)	140, 154, 220, 317, 511
CviJI	RGCY	6 cut(s)	27, 238, 351, 424, 515, 652
CviKI_1	RGCY	6 cut(s)	27, 238, 351, 424, 515, 652
CviQI	GTAC	6 cut(s)	7, 60, 223, 477, 592, 637
DdeI	CTNAG	1 cut(s)	587
DpnI	GATC	3 cut(s)	138, 303, 471
DpnII	GATC	3 cut(s)	136, 301, 469
DrdI	GACNNNNNNGTC	1 cut(s)	681
DseDI	GACNNNNNNGTC	1 cut(s)	681
Eam1104I	CTCTTC	5 cut(s)	33, 336, 552, 565, 689
EarI	CTCTTC	5 cut(s)	33, 336, 552, 565, 689
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	80
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	5 cut(s)	143, 157, 223, 320, 514
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	5 cut(s)	139, 153, 219, 316, 510
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	3 cut(s)	170, 410, 470
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	3 cut(s)	516, 612, 672
GluI	GCNGC	1 cut(s)	422
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	5 cut(s)	143, 157, 223, 320, 514
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	3 cut(s)	180, 615, 675
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	88, 469
Hpy188III	TCNNGA	5 cut(s)	53, 140, 233, 446, 612
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	4 cut(s)	28, 281, 409, 556
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	421, 659
HpyF3I	CTNAG	1 cut(s)	587
Hsp92II	CATG	5 cut(s)	143, 157, 223, 320, 514
Kpn2I	TCCGGA	1 cut(s)	52
KpnI	GGTACC	2 cut(s)	10, 640
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	136, 301, 469
LguI	GCTCTTC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	41, 57, 66, 558, 620
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	2 cut(s)	103, 448
MaeI	CTAG	3 cut(s)	516, 612, 672
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	138, 303, 471
MboI	GATC	3 cut(s)	136, 301, 469
MfeI	CAATTG	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	609, 669
MnlI	CCTC	8 cut(s)	136, 181, 286, 337, 442, 532, 568, 690
MroI	TCCGGA	1 cut(s)	52
MseI	TTAA	2 cut(s)	20, 654
MspA1I	CMGCKG	2 cut(s)	228, 424
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	241
MvnI	CGCG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	3 cut(s)	136, 301, 469
NheI	GCTAGC	1 cut(s)	515
NlaIII	CATG	5 cut(s)	143, 157, 223, 320, 514
NlaIV	GGNNCC	3 cut(s)	8, 543, 638
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	223
PagI	TCATGA	1 cut(s)	139
PciI	ACATGT	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	2 cut(s)	609, 669
PpsI	GAGTC	2 cut(s)	609, 669
PscI	ACATGT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	8, 543, 638
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	6 cut(s)	8, 61, 224, 478, 593, 638
RsaNI	GTAC	6 cut(s)	7, 60, 223, 477, 592, 637
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	20, 654
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	3 cut(s)	136, 301, 469
SchI	GAGTC	2 cut(s)	609, 669
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	103, 448
SmlI	CTYRAG	2 cut(s)	19, 677
SmoI	CTYRAG	2 cut(s)	19, 677
SsiI	CCGC	2 cut(s)	228, 474
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	3 cut(s)	516, 612, 672
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	685
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	20, 654
Tru9I	TTAA	2 cut(s)	20, 654
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	1 cut(s)	328
Vha464I	CTTAAG	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	4 cut(s)	80, 171, 427, 433
XbaI	TCTAGA	1 cut(s)	611
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	3 cut(s)	516, 612, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.