Rh5AG467700

Zinc finger protein CONSTANS-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013042
Physical Location & Seq
Forward (+)
80291131 .. 80292386
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG467700.1

Sequence Viewer

Length: 690 bp
ATGAGGTACCATTCATTCTTAAGAAGCCCAAAGAAGGAGGAGCAGCAGGTGCCGGACAGTGCTAATTCTTCCGAGGATTTCTCTGACACTACCAAAGATGGTTATGTCAATGGAGAGGTTGATATCATGGATGACTTGGAGCGCATTTGGGGGATCGAAGGAGACGAAGACGATGAGAAGCTACCGAAGGGTCACAACATGTTTACTGGTCAGGAACTTAATTGGGATTTCATGGATTGGGATGAGTTTCCTAATGGTGAAGAAGGGGATGGAGAGGTAGAGAATGAAGTGTTTGGTGATTCAGCTGAGAGGTGCTTTTTCGAAGAGGAAAGCTACTGTAAGAAGGTTGTGAAGAGAGAGAGTAGTACTGTTGGGTTTTGGGATGATGATGAGGATATGAAGAAGGTGCAATTGAATTTGAACTTAAATTATCAAGAGGTATTGGATGCTTGGTCTGATCGTGGTTCTCTTTGGGCTGATGATTGTTCATCACATTCTTCCAAGGCTGCTAGCATCGGCAATTATATGGGAGAGGTGCCAGTAATGGAAGAAGAGAAAAGTACAAGAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAACGTCAGTCTAGACTCTTCTCCAAGAAGATAAGGTACCAAGTCCGCAAGCTCAATGCAGATAAAAGACCTAGACTCAAGGTAAGTCATTAG

Protein Analysis

229

Amino Acids

26.73

Weight (kDa)

4.71

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 190 - 226 3.1e-14 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07050 AT1G07050
fragaria_vesca FvH4_3g39550
malus_domestica MD03G1059900.v1.1 MD11G1063100.v1.1
prunus_persica Prupe.6G050300_v2.0.a1 Prupe.6G050300_v2.0.a1
pyrus_communis pycom11g05280
rosa_chinensis RchiOBHm_Chr5g0071321
rosa_laevigata RLG00000036202
rosa_multiflora Rmu_sc0006990.1_g000005
rosa_roxburghii Rroxscaffold_1G00009810
rosa_rugosa Rorug05G0411300
rosa_samantha Rh5AG467700 Rh5BG486200 Rh5CG510600 Rh5DG497400
rosa_wichuraiana Rw5G043450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
Acc65I GGTACC 2 cut(s) 6, 633
AccB1I GGYRCC 4 cut(s) 6, 49, 535, 633
AciI CCGC 1 cut(s) 643
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 415
AfaI GTAC 5 cut(s) 8, 367, 562, 590, 635
AfiI CCNNNNNNNGG 1 cut(s) 34
AflII CTTAAG 1 cut(s) 19
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 2 cut(s) 415, 421
AluBI AGCT 4 cut(s) 181, 305, 333, 649
AluI AGCT 4 cut(s) 181, 305, 333, 649
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 43, 506
ApoI RAATTY 1 cut(s) 415
Asp718I GGTACC 2 cut(s) 6, 633
AspLEI GCGC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 269, 308
AsuII TTCGAA 1 cut(s) 321
AsuNHI GCTAGC 1 cut(s) 509
BanI GGYRCC 4 cut(s) 6, 49, 535, 633
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 2 cut(s) 55, 493
BccI CCATC 2 cut(s) 92, 263
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 3 cut(s) 510, 609, 669
BfrI CTTAAG 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 44, 507
BlsI GCNGC 2 cut(s) 45, 508
BmcAI AGTACT 1 cut(s) 367
BmiI GGNNCC 4 cut(s) 8, 51, 537, 635
BmsI GCATC 2 cut(s) 436, 522
BmtI GCTAGC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 659
BsaJI CCNNGG 2 cut(s) 72, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 211, 539
BseDI CCNNGG 2 cut(s) 72, 501
BseGI GGATG 5 cut(s) 136, 247, 274, 388, 451
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 297, 575
BseNI ACTGG 2 cut(s) 211, 539
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 55, 493
BshNI GGYRCC 4 cut(s) 6, 49, 535, 633
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 321
Bsp143I GATC 2 cut(s) 153, 457
BspACI CCGC 1 cut(s) 643
BspCNI CTCAG 2 cut(s) 298, 576
BspLI GGNNCC 4 cut(s) 8, 51, 537, 635
BspMI ACCTGC 1 cut(s) 37
BspOI GCTAGC 1 cut(s) 513
BspPI GGATC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 321
BspT107I GGYRCC 4 cut(s) 6, 49, 535, 633
BspTI CTTAAG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 211, 539
BssECI CCNNGG 2 cut(s) 72, 501
BssMI GATC 2 cut(s) 153, 457
BssT1I CCWWGG 1 cut(s) 501
Bst4CI ACNGT 3 cut(s) 59, 338, 370
Bst6I CTCTTC 4 cut(s) 318, 347, 546, 620
BstAFI CTTAAG 1 cut(s) 19
BstAPI GCANNNNNTGC 1 cut(s) 49
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 511, 647
BstDEI CTNAG 2 cut(s) 306, 584
BstF5I GGATG 5 cut(s) 136, 247, 274, 388, 451
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 2 cut(s) 156, 460
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 153, 457
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 55, 493
BstV2I GAAGAC 1 cut(s) 174
BtsCI GGATG 5 cut(s) 136, 247, 274, 388, 451
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 511, 647
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 5 cut(s) 7, 366, 561, 589, 634
CviAII CATG 3 cut(s) 127, 199, 232
CviJI RGCY 7 cut(s) 27, 181, 305, 333, 476, 506, 649
CviKI_1 RGCY 7 cut(s) 27, 181, 305, 333, 476, 506, 649
CviQI GTAC 5 cut(s) 7, 366, 561, 589, 634
DdeI CTNAG 2 cut(s) 306, 584
DpnI GATC 2 cut(s) 155, 459
DpnII GATC 2 cut(s) 153, 457
Eam1104I CTCTTC 4 cut(s) 318, 347, 546, 620
EarI CTCTTC 4 cut(s) 318, 347, 546, 620
Eco130I CCWWGG 1 cut(s) 501
Eco32I GATATC 1 cut(s) 124
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 501
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 3 cut(s) 130, 202, 235
FaiI YATR 7 cut(s) 105, 128, 200, 233, 398, 525, 527
FatI CATG 3 cut(s) 126, 198, 231
Fnu4HI GCNGC 2 cut(s) 44, 507
FokI GGATG 5 cut(s) 143, 254, 281, 395, 458
Fsp4HI GCNGC 2 cut(s) 44, 507
FspBI CTAG 3 cut(s) 510, 609, 669
GlaI GCGC 1 cut(s) 143
GluI GCNGC 2 cut(s) 44, 507
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 144
Hin1II CATG 3 cut(s) 130, 202, 235
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 3 cut(s) 299, 612, 672
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 269, 308
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 4 cut(s) 73, 85, 457, 585
Hpy188III TCNNGA 3 cut(s) 212, 434, 609
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 7 cut(s) 28, 152, 181, 257, 337, 397, 561
HpyCH4III ACNGT 3 cut(s) 59, 338, 370
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 2 cut(s) 409, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 2 cut(s) 306, 584
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 3 cut(s) 130, 202, 235
HspAI GCGC 1 cut(s) 142
KpnI GGTACC 2 cut(s) 10, 637
Kzo9I GATC 2 cut(s) 153, 457
LmnI GCTCC 2 cut(s) 40, 139
LpnPI CCDG 5 cut(s) 32, 66, 192, 197, 552
Lsp1109I GCAGC 2 cut(s) 55, 493
LweI GCATC 2 cut(s) 436, 522
MaeI CTAG 3 cut(s) 510, 609, 669
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 155, 459
MboI GATC 2 cut(s) 153, 457
MfeI CAATTG 1 cut(s) 410
MluCI AATT 6 cut(s) 64, 220, 410, 415, 427, 520
MlyI GAGTC 2 cut(s) 606, 666
MseI TTAA 3 cut(s) 20, 219, 425
MspA1I CMGCKG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 19
MspI CCGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 410
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 2 cut(s) 153, 457
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 3 cut(s) 130, 202, 235
NlaIV GGNNCC 4 cut(s) 8, 51, 537, 635
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 202
NspV TTCGAA 1 cut(s) 321
PaqCI CACCTGC 1 cut(s) 37
PciI ACATGT 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 2 cut(s) 45, 508
PleI GAGTC 2 cut(s) 606, 666
PpsI GAGTC 2 cut(s) 606, 666
PscI ACATGT 1 cut(s) 198
PspN4I GGNNCC 4 cut(s) 8, 51, 537, 635
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 5 cut(s) 8, 367, 562, 590, 635
RsaNI GTAC 5 cut(s) 7, 366, 561, 589, 634
SaqAI TTAA 3 cut(s) 20, 219, 425
SatI GCNGC 2 cut(s) 44, 507
Sau3AI GATC 2 cut(s) 153, 457
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 2 cut(s) 606, 666
SfaNI GCATC 2 cut(s) 436, 522
SfuI TTCGAA 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 19, 674
SmoI CTYRAG 2 cut(s) 19, 674
Sse9I AATT 6 cut(s) 64, 220, 410, 415, 427, 520
SsiI CCGC 1 cut(s) 643
SspMI CTAG 3 cut(s) 510, 609, 669
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 3 cut(s) 59, 338, 370
TaiI ACGT 1 cut(s) 604
TaqI TCGA 2 cut(s) 156, 321
TasI AATT 6 cut(s) 64, 220, 410, 415, 427, 520
TatI WGTACW 2 cut(s) 365, 560
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 3 cut(s) 20, 219, 425
Tru9I TTAA 3 cut(s) 20, 219, 425
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 43, 506
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 220, 300, 413, 477
TspRI CASTG 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 19
XapI RAATTY 1 cut(s) 415
XbaI TCTAGA 1 cut(s) 608
XceI RCATGY 1 cut(s) 202
XspI CTAG 3 cut(s) 510, 609, 669
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.