AT1G07490

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016493
Physical Location & Seq
Reverse (-)
2301380 .. 2302021
642 bp
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UTR
Exon/CDS
Intron
AT1G07490.1

Sequence Viewer

Length: 324 bp
ATGGACGAGAAGTGGAGGCTGTCGAAAAAGGATGCATTAGCTGCGTCGTGTTCATCTTCTTCAACTTCATCTAAATCCAAGTTCTCTAGAAGCTTCTCCACAAGCGCTTCCTCCTCAAAAGCTCCTGCATTCGTACGGAGCTCATCCACCAAATGCTCAGTGCCTTCATCTTCGTCGTCTTCAATCTCAAGAAGTTCATCGAAAAAAGAGAAAGGGTCAATAACACAAAAGTACAGTAGCTTGGCCAAAGAACAGAAGGGAAGGTTTTACATCATGAGAAGGTGTGTGGCTATGCTTGTATGTTGGCATAAACATGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

107

Amino Acids

11.69

Weight (kDa)

10.23

Isoelectric Point (pI)

79.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 83 - 101 1.1e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 243
AfaI GTAC 2 cut(s) 135, 233
AfeI AGCGCT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 63, 183
AluBI AGCT 5 cut(s) 41, 93, 122, 141, 240
AluI AGCT 5 cut(s) 41, 93, 122, 141, 240
Alw21I GWGCWC 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 245
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 28
BfaI CTAG 2 cut(s) 87, 322
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 172
BseGI GGATG 2 cut(s) 37, 143
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 143
BsiWI CGTACG 1 cut(s) 133
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 143
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 170
BspHI TCATGA 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 37, 143
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 2 cut(s) 37, 143
BtsIMutI CAGTG 1 cut(s) 165
CciI TCATGA 1 cut(s) 273
CfoI GCGC 1 cut(s) 107
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 134, 232
CviAII CATG 2 cut(s) 274, 314
CviJI RGCY 8 cut(s) 19, 41, 93, 122, 141, 240, 245, 290
CviKI_1 RGCY 8 cut(s) 19, 41, 93, 122, 141, 240, 245, 290
CviQI GTAC 2 cut(s) 134, 232
DdeI CTNAG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 143
Eco47III AGCGCT 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 2 cut(s) 277, 317
FaiI YATR 5 cut(s) 275, 293, 301, 309, 315
FatI CATG 2 cut(s) 273, 313
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 44, 130
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 87, 322
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 277, 317
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 1 cut(s) 317
Hpy188III TCNNGA 3 cut(s) 87, 189, 274
Hpy99I CGWCG 2 cut(s) 49, 178
HpyAV CCTTC 4 cut(s) 174, 250, 255, 273
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 35, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 157
Hsp92II CATG 2 cut(s) 277, 317
HspAI GCGC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 127, 138
LpnPI CCDG 1 cut(s) 138
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 22
MaeI CTAG 2 cut(s) 87, 322
MboII GAAGA 4 cut(s) 48, 51, 162, 171
MhlI GDGCHC 1 cut(s) 143
MlsI TGGCCA 1 cut(s) 245
MluNI TGGCCA 1 cut(s) 245
MnlI CCTC 3 cut(s) 9, 121, 124
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 37
MscI TGGCCA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 277, 317
NsiI ATGCAT 1 cut(s) 37
PagI TCATGA 1 cut(s) 273
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 317
Pfl23II CGTACG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 143
PspLI CGTACG 1 cut(s) 133
RsaI GTAC 2 cut(s) 135, 233
RsaNI GTAC 2 cut(s) 134, 232
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 143
SatI GCNGC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 143
SetI ASST 7 cut(s) 43, 95, 124, 143, 242, 266, 284
SfaNI GCATC 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
SspMI CTAG 2 cut(s) 87, 322
SstI GAGCTC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 23, 200
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 1 cut(s) 165
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 42, 57, 156, 186
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 86
XspI CTAG 2 cut(s) 87, 322
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.