AT3G46613

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016493
Physical Location & Seq
Forward (+)
17165791 .. 17166399
609 bp
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UTR
Exon/CDS
Intron
AT3G46613.1

Sequence Viewer

Length: 435 bp
ATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATTCCATCTTTCAAACTACTCATTTCTCTTCTTCTTCAAAACCTTTTTTCACAAGAAGCTTCTCAACAAAAACTTCATCTTCTCCATCATCCAAATCCCATTTCACTAGAAGCTTCTCAACAAAACCTTCGTCGTCTTCTAGTTCTTCAGATCTCATTTTCAGACGGAGTTTCTCCGCAAAGCCTAAAACATCGAAGTCTTTGCTTTTGTCTAGAAGCTGTTCCACGAAATCCTCAGCTGATTTATCTTCCAAGTCTTCTTCTCTATCTAGAATCTTGTCAAAGAAAGGAGCTTCCGTGACGGGAAAATGCTTCAAAGTAGCGAAGGAGCATAAGTCCCGCTTCTACATAATCAAACGCTGTGTTTTGATGCTCGTTTGCTGGCACAAACATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

144

Amino Acids

16.11

Weight (kDa)

10.6

Isoelectric Point (pI)

66.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 121 - 139 4.9e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 213, 376
AcuI CTGAAG 1 cut(s) 168
AgsI TTSAA 4 cut(s) 11, 50, 75, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 6 cut(s) 16, 96, 150, 255, 275, 329
AluI AGCT 6 cut(s) 16, 96, 150, 255, 275, 329
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp700I GAANNNNTTC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 165, 285
BbvCI CCTCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 50, 130
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BfaI CTAG 4 cut(s) 144, 177, 249, 306
BglII AGATCT 1 cut(s) 187
BmsI GCATC 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 165, 285
Bpu10I CCTNAGC 1 cut(s) 271
BsaXI ACNNNNNCTCC 4 cut(s) 318, 348, 356, 386
BseGI GGATG 2 cut(s) 10, 125
BseMII CTCAG 1 cut(s) 285
BslFI GGGAC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 358
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 2 cut(s) 213, 376
BspCNI CTCAG 1 cut(s) 284
BssMI GATC 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 1 cut(s) 271
BstF5I GGATG 2 cut(s) 10, 125
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstV2I GAAGAC 2 cut(s) 165, 285
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BtsCI GGATG 2 cut(s) 10, 125
Cac8I GCNNGC 1 cut(s) 419
CviJI RGCY 7 cut(s) 16, 96, 150, 220, 255, 275, 329
CviKI_1 RGCY 7 cut(s) 16, 96, 150, 220, 255, 275, 329
DdeI CTNAG 1 cut(s) 271
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 168
FaiI YATR 4 cut(s) 19, 27, 369, 386
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 358
FauI CCCGC 1 cut(s) 383
FokI GGATG 2 cut(s) 17, 112
FspBI CTAG 4 cut(s) 144, 177, 249, 306
HindIII AAGCTT 2 cut(s) 94, 148
HinfI GANTC 3 cut(s) 22, 38, 309
Hpy188I TCNGA 2 cut(s) 187, 200
Hpy188III TCNNGA 3 cut(s) 249, 306, 432
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 174, 355
HpyF3I CTNAG 1 cut(s) 271
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 326, 364
LpnPI CCDG 1 cut(s) 403
LweI GCATC 1 cut(s) 396
MaeI CTAG 4 cut(s) 144, 177, 249, 306
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 9 cut(s) 57, 60, 63, 108, 165, 174, 276, 285, 288
MflI RGATCY 1 cut(s) 187
MnlI CCTC 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 275
NdeII GATC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 22, 38, 309
PsuI RGATCY 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 275
Sau3AI GATC 1 cut(s) 187
SetI ASST 8 cut(s) 18, 82, 98, 152, 166, 257, 277, 331
SfaNI GCATC 1 cut(s) 396
SsiI CCGC 2 cut(s) 213, 376
SspMI CTAG 4 cut(s) 144, 177, 249, 306
TaqI TCGA 1 cut(s) 230
TfiI GAWTC 3 cut(s) 22, 38, 309
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 2 cut(s) 217, 322
XbaI TCTAGA 2 cut(s) 248, 305
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 4 cut(s) 144, 177, 249, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.