AT2G29125

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016493
Physical Location & Seq
Forward (+)
12523276 .. 12524193
918 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29125.1

Sequence Viewer

Length: 348 bp
ATGGAGGAGAAGTGGAAGCTGTCGAAGAAAGACACAACAGCTTCTTCTTCCTCCTCTAAGTCAAAGTTTTCTAGAAGCTTCTCAACGAGTGCTTCCTCCACAAAGTCTCCAATATTCGTAAGGAGTTCCTCTACTAAATGCTCTGTTCCTTCTTCCTCCTCGTCCTCTTCTTCTTCCTCTTCAATCTCAAGAAGCTTCTCAAGAAAAGAGAGAAGATCTTCTTCTTCATCATCTTCTTCTATCACTCAGAAATATAGCAGCTTGGCTAAAGAACAGAAGGCAAGGTTTTACATCATGAGAAGGTGTGTGGCTATGCTTGTTTGTTGGCACAAACATGGAGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

10.56

Isoelectric Point (pI)

99.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 90 - 108 8.2e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 5 cut(s) 19, 41, 78, 195, 261
AluI AGCT 5 cut(s) 19, 41, 78, 195, 261
Alw26I GTCTC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 72
BglII AGATCT 1 cut(s) 215
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
BpuEI CTTGAG 2 cut(s) 172, 184
BsaXI ACNNNNNCTCC 3 cut(s) 26, 91, 121
BseMII CTCAG 1 cut(s) 260
BseRI GAGGAG 3 cut(s) 20, 43, 148
BseXI GCAGC 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 294
BssMI GATC 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 172, 184
BstDEI CTNAG 2 cut(s) 57, 246
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
CciI TCATGA 1 cut(s) 294
CviAII CATG 2 cut(s) 295, 335
CviJI RGCY 7 cut(s) 19, 41, 78, 195, 261, 266, 311
CviKI_1 RGCY 7 cut(s) 19, 41, 78, 195, 261, 266, 311
DdeI CTNAG 2 cut(s) 57, 246
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 2 cut(s) 172, 184
EarI CTCTTC 2 cut(s) 172, 184
FaeI CATG 2 cut(s) 298, 338
FaiI YATR 4 cut(s) 255, 296, 314, 336
FalI AAGNNNNNCTT 2 cut(s) 205, 237
FatI CATG 2 cut(s) 294, 334
Fnu4HI GCNGC 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 1 cut(s) 72
GluI GCNGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 298, 338
HindIII AAGCTT 2 cut(s) 76, 193
HinfI GANTC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 4 cut(s) 72, 189, 201, 295
HpyAV CCTTC 3 cut(s) 159, 271, 294
HpyF3I CTNAG 2 cut(s) 57, 246
Hsp92II CATG 2 cut(s) 298, 338
Kzo9I GATC 1 cut(s) 215
Lsp1109I GCAGC 1 cut(s) 270
MaeI CTAG 1 cut(s) 72
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MflI RGATCY 1 cut(s) 215
MnlI CCTC 8 cut(s) 61, 64, 106, 139, 166, 169, 175, 187
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 1 cut(s) 346
MslI CAYNNNNRTG 1 cut(s) 333
NdeII GATC 1 cut(s) 215
NlaIII CATG 2 cut(s) 298, 338
PagI TCATGA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 346
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 215
SetI ASST 7 cut(s) 21, 43, 80, 197, 263, 287, 305
SgeI CNNG 9 cut(s) 84, 99, 172, 201, 213, 274, 294, 307, 329
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 2 cut(s) 187, 199
SmoI CTYRAG 2 cut(s) 187, 199
SspI AATATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 72
TaqI TCGA 1 cut(s) 23
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 346
Tru9I TTAA 1 cut(s) 346
TseI GCWGC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 216
XbaI TCTAGA 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.