Rroxscaffold_1G00015250

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016493
Physical Location & Seq
Reverse (-)
19008730 .. 19009670
941 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00015250.1

Sequence Viewer

Length: 432 bp
ATGGATGAGAAATGGAAGCTATCGAAGAAGGAAAGCAGTTCTTCTTCCAAGTTTGCCTTCACGAGAAGCTCTTCCACAAGAAGCACATCCTCCAATGCTCCACTTCTTTCAAGAAGCTATTCCCAGAAGAGCAGCGTCTCTTCCAGTTCCAACTCCAAGTGCCCTCCTCTTCCCCGGAGCTTCTCTCAAAAGAACTCTTCCATAAGCCGAAAGTGCAGCAGCCTCGCCAAGGAACACAAGGCCAGATTTTACATCATGAGGAGATGTGTGGCTATGCTTGTTTGTTGGCACAAGCATGGAAAGGAAAAGATTCTCTTTGGCTGTTGGGGAGCCTCCAAATATTATAAGACACTAAGACAGTGGAGTAACTTCTATCTCTGCCTTGGTAATGCAAGTCATGCACCTTTTCTTGCTTTGGAAAAATTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

143

Amino Acids

16.29

Weight (kDa)

10.11

Isoelectric Point (pI)

70.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 77 - 95 1.4e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AcsI RAATTY 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 19, 69, 117, 180
AluI AGCT 4 cut(s) 19, 69, 117, 180
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 3 cut(s) 132, 216, 219
ApoI RAATTY 1 cut(s) 422
Asp700I GAANNNNTTC 3 cut(s) 70, 118, 309
AsuC2I CCSGG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 164
BauI CACGAG 1 cut(s) 61
BbvI GCAGC 3 cut(s) 144, 228, 231
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 142
BisI GCNGC 3 cut(s) 133, 217, 220
BlsI GCNGC 3 cut(s) 134, 218, 221
Bme1390I CCNGG 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 169, 201
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 173, 228, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 173, 228, 382
BseGI GGATG 2 cut(s) 10, 86
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 2 cut(s) 156, 274
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 3 cut(s) 144, 228, 231
BsgI GTGCAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 164
BspANI GGCC 1 cut(s) 242
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 331
BspQI GCTCTTC 2 cut(s) 76, 122
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 173, 228, 382
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 2 cut(s) 228, 382
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 5 cut(s) 76, 122, 145, 174, 202
BstAPI GCANNNNNTGC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 10, 86
BstMAI GTCTC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 213, 398
BstSCI CCNGG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 3 cut(s) 144, 228, 231
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 10, 86
BtsIMutI CAGTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 255
CseI GACGC 1 cut(s) 124
CviAII CATG 3 cut(s) 256, 296, 398
DdeI CTNAG 1 cut(s) 353
Eam1104I CTCTTC 5 cut(s) 76, 122, 145, 174, 202
EarI CTCTTC 5 cut(s) 76, 122, 145, 174, 202
Eco130I CCWWGG 2 cut(s) 228, 382
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 228, 382
ErhI CCWWGG 2 cut(s) 228, 382
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 3 cut(s) 259, 299, 401
FaiI YATR 6 cut(s) 203, 257, 275, 297, 345, 399
FalI AAGNNNNNCTT 6 cut(s) 25, 57, 41, 73, 299, 331
FatI CATG 3 cut(s) 255, 295, 397
Fnu4HI GCNGC 3 cut(s) 133, 217, 220
FokI GGATG 2 cut(s) 17, 73
Fsp4HI GCNGC 3 cut(s) 133, 217, 220
GluI GCNGC 3 cut(s) 133, 217, 220
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 175
HgaI GACGC 1 cut(s) 124
Hin1II CATG 3 cut(s) 259, 299, 401
HinfI GANTC 1 cut(s) 310
HpaII CCGG 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 61, 111, 256
HpyAV CCTTC 2 cut(s) 22, 67
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 216, 392, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 398
HpyF3I CTNAG 1 cut(s) 353
Hsp92II CATG 3 cut(s) 259, 299, 401
LguI GCTCTTC 2 cut(s) 76, 122
LmnI GCTCC 3 cut(s) 103, 177, 329
LpnPI CCDG 4 cut(s) 137, 157, 188, 256
Lsp1109I GCAGC 3 cut(s) 144, 228, 231
MaeIII GTNAC 1 cut(s) 365
MboII GAAGA 8 cut(s) 33, 36, 37, 63, 132, 139, 161, 189
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 6 cut(s) 100, 174, 177, 233, 252, 343
MroXI GAANNNNTTC 3 cut(s) 70, 118, 309
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 213, 398
NciI CCSGG 1 cut(s) 175
NlaIII CATG 3 cut(s) 259, 299, 401
NlaIV GGNNCC 1 cut(s) 331
PagI TCATGA 1 cut(s) 255
PciSI GCTCTTC 2 cut(s) 76, 122
PdmI GAANNNNTTC 3 cut(s) 70, 118, 309
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 3 cut(s) 134, 218, 221
PsiI TTATAA 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 294
SapI GCTCTTC 2 cut(s) 76, 122
SatI GCNGC 3 cut(s) 133, 217, 220
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 164
SetI ASST 5 cut(s) 21, 71, 119, 182, 406
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 1 cut(s) 422
SspI AATATT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 2 cut(s) 228, 382
TaaI ACNGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 422
TfiI GAWTC 1 cut(s) 310
TscAI CASTG 1 cut(s) 365
TseI GCWGC 3 cut(s) 132, 216, 219
TspRI CASTG 1 cut(s) 365
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 1 cut(s) 422
XmnI GAANNNNTTC 3 cut(s) 70, 118, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.