FvH4_3g04210

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016493
Physical Location & Seq
Forward (+)
2359667 .. 2360037
371 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04210.t1

Sequence Viewer

Length: 282 bp
ATGGATGAGAAATGGAAGCTACCAATTGCAAAGAAGGAAAGCAGTTCTTATTCCAAGTTCGCCTTCACCTGCAGAAGCTCTTCCACTGGAAGCACTTTCTCCAATTCTCCAGTACTTCTGTCAAGAAGCTCTCCTCCTCTTCCACGGAGCTTCTCGCAAAAGAGCTCTTCCATTAGCCGAAAGTGCAGCAGCCTCGCCAAGGAACACAAGACCAGATTTTACATCATGAGGAGATGTGTGGCTATGCTTGTTTGTTGGCACAAGCATGGAAGTGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

94

Amino Acids

10.51

Weight (kDa)

10.17

Isoelectric Point (pI)

83.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 67 - 85 1.3e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 77
Acc36I ACCTGC 1 cut(s) 77
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 5 cut(s) 19, 78, 129, 150, 165
AluI AGCT 5 cut(s) 19, 78, 129, 150, 165
Alw21I GWGCWC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 186, 189
Asp700I GAANNNNTTC 2 cut(s) 79, 274
AsuHPI GGTGA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 198, 201
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 2 cut(s) 187, 190
BlsI GCNGC 2 cut(s) 188, 191
BmcAI AGTACT 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 143, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 91, 110
BseDI CCNNGG 2 cut(s) 143, 198
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 91, 110
BseRI GAGGAG 3 cut(s) 123, 126, 244
BseXI GCAGC 2 cut(s) 198, 201
BsgI GTGCAG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 167
BspHI TCATGA 2 cut(s) 225, 278
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 77
BspQI GCTCTTC 2 cut(s) 85, 172
BsrI ACTGG 2 cut(s) 91, 110
BssECI CCNNGG 2 cut(s) 143, 198
BssT1I CCWWGG 1 cut(s) 198
Bst6I CTCTTC 3 cut(s) 85, 144, 172
BstDSI CCRYGG 1 cut(s) 143
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 198, 201
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 1 cut(s) 77
CciI TCATGA 2 cut(s) 225, 278
Csp6I GTAC 1 cut(s) 113
CviAII CATG 3 cut(s) 226, 266, 279
CviJI RGCY 8 cut(s) 19, 78, 129, 150, 165, 177, 192, 242
CviKI_1 RGCY 8 cut(s) 19, 78, 129, 150, 165, 177, 192, 242
CviQI GTAC 1 cut(s) 113
Eam1104I CTCTTC 3 cut(s) 85, 144, 172
EarI CTCTTC 3 cut(s) 85, 144, 172
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 229, 269, 282
FaiI YATR 4 cut(s) 227, 245, 267, 280
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 47, 79
FatI CATG 3 cut(s) 225, 265, 278
Fnu4HI GCNGC 2 cut(s) 187, 190
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 187, 190
GluI GCNGC 2 cut(s) 187, 190
GsuI CTGGAG 1 cut(s) 93
Hin1II CATG 3 cut(s) 229, 269, 282
HinfI GANTC 1 cut(s) 275
HphI GGTGA 1 cut(s) 58
Hpy188III TCNNGA 3 cut(s) 123, 226, 279
HpyAV CCTTC 2 cut(s) 28, 73
HpyCH4V TGCA 3 cut(s) 29, 72, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 229, 269, 282
LguI GCTCTTC 2 cut(s) 85, 172
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 4 cut(s) 72, 82, 123, 226
Lsp1109I GCAGC 2 cut(s) 198, 201
MboII GAAGA 3 cut(s) 72, 131, 159
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 2 cut(s) 24, 103
MnlI CCTC 4 cut(s) 144, 147, 203, 222
MroXI GAANNNNTTC 2 cut(s) 79, 274
MslI CAYNNNNRTG 2 cut(s) 264, 270
MunI CAATTG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 183
NlaIII CATG 3 cut(s) 229, 269, 282
PagI TCATGA 2 cut(s) 225, 278
PaqCI CACCTGC 1 cut(s) 77
PciSI GCTCTTC 2 cut(s) 85, 172
PdmI GAANNNNTTC 2 cut(s) 79, 274
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 188, 191
Psp124BI GAGCTC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 74
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 2 cut(s) 264, 270
SacI GAGCTC 1 cut(s) 167
SapI GCTCTTC 2 cut(s) 85, 172
SatI GCNGC 2 cut(s) 187, 190
ScaI AGTACT 1 cut(s) 114
SduI GDGCHC 1 cut(s) 167
SetI ASST 6 cut(s) 21, 71, 80, 131, 152, 167
SfcI CTRYAG 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 264, 270
Sse9I AATT 2 cut(s) 24, 103
SstI GAGCTC 1 cut(s) 167
StyI CCWWGG 1 cut(s) 198
TasI AATT 2 cut(s) 24, 103
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 1 cut(s) 91
TseI GCWGC 2 cut(s) 186, 189
TspDTI ATGAA 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 197
XmnI GAANNNNTTC 2 cut(s) 79, 274
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.