MD11G1096600.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016493
Physical Location & Seq
Reverse (-)
8032136 .. 8032429
294 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1096600.v1.1.491

Sequence Viewer

Length: 294 bp
ATGGATGAGAAGTGGAAGCTACCAAAGAACAAGCACGAAGGCACTTCATCATCAAGTTCTTCTTCCAAGTTTGCCTTCACAAGAAGTTCATCAACCAGAAGCACATCTTCCTTGCTGAGAAGCAATTCACAAAAAAGCAATGCCTCTAGCTCCAAGTGTCCTCTTCCAAGAAGCTTCTCACAAAAGAGCTCTTCCATTAGCCGCAAGTGCAGTAGCCTTGCCAAGGAACAGAAGGCTAGATTCTACATCATGAGAAGATGTGTTGCTATGCTTGTTTGTTGGCGTGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

98

Amino Acids

10.87

Weight (kDa)

10.63

Isoelectric Point (pI)

80.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 75 - 93 6.2e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 19, 150, 174, 189
AluI AGCT 4 cut(s) 19, 150, 174, 189
Alw21I GWGCWC 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 191
BfaI CTAG 2 cut(s) 147, 237
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 191
BspACI CCGC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 222
Bst6I CTCTTC 2 cut(s) 168, 196
BstDEI CTNAG 1 cut(s) 116
BstENI CCTNNNNNAGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 249
CviAII CATG 1 cut(s) 250
CviJI RGCY 7 cut(s) 19, 150, 174, 189, 201, 216, 236
CviKI_1 RGCY 7 cut(s) 19, 150, 174, 189, 201, 216, 236
DdeI CTNAG 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 168, 196
EarI CTCTTC 2 cut(s) 168, 196
Ecl136II GAGCTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 253
FaiI YATR 2 cut(s) 251, 269
FalI AAGNNNNNCTT 6 cut(s) 46, 78, 59, 91, 91, 123
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 2 cut(s) 147, 237
GluI GCNGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 32, 85, 226
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 1 cut(s) 253
LguI GCTCTTC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 1 cut(s) 109
MaeI CTAG 2 cut(s) 147, 237
MboII GAAGA 6 cut(s) 51, 54, 99, 155, 183, 267
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 124
MnlI CCTC 2 cut(s) 154, 171
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 207
NlaIII CATG 1 cut(s) 253
PagI TCATGA 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 191
SacI GAGCTC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 191
SetI ASST 4 cut(s) 21, 152, 176, 191
Sse9I AATT 1 cut(s) 124
SsiI CCGC 1 cut(s) 202
SspMI CTAG 2 cut(s) 147, 237
SstI GAGCTC 1 cut(s) 191
StyI CCWWGG 1 cut(s) 222
TasI AATT 1 cut(s) 124
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 36, 78
XagI CCTNNNNNAGG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 2 cut(s) 147, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.