Rh5DG463500

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016493
Physical Location & Seq
Forward (+)
73472859 .. 73473170
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG463500.1

Sequence Viewer

Length: 312 bp
ATGGATGAGAAATGGAAGCTATCGAAGAAGGAAAGCAGTTCTTCTTCCAAGTTTGCCTTCACGAGAAGCTCTTCCACAAGAAGCACATCCTCCAATGCTCCACTTCTTTCAAGAAGCTATTCCCAGAAAAGCAGTGTCTCTTCCAGTTCCAACTCCAAGTGCCCTCCTCTTCCCCGGAGCTTCTCGCAAAAGAACTCTTCCATAAGCCGAAAGTGCAGCAGCCTCGCCAAGGAACACAAGGCCAGATTTTACATCATGAGGAGATGTGTGGCTATGCTTGTTTGTTGGCACAAGCATGGAAGCGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

103

Amino Acids

11.53

Weight (kDa)

10.39

Isoelectric Point (pI)

83.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 77 - 95 8.3e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 4 cut(s) 19, 69, 117, 180
AluI AGCT 4 cut(s) 19, 69, 117, 180
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 216, 219
Asp700I GAANNNNTTC 3 cut(s) 70, 118, 304
AsuC2I CCSGG 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 164
BauI CACGAG 1 cut(s) 61
BbvI GCAGC 2 cut(s) 228, 231
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 142
BisI GCNGC 2 cut(s) 217, 220
BlsI GCNGC 2 cut(s) 218, 221
Bme1390I CCNGG 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 173, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 173, 228
BseGI GGATG 2 cut(s) 10, 86
BseLI CCNNNNNNNGG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 2 cut(s) 156, 274
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 2 cut(s) 228, 231
BsgI GTGCAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 164
BspANI GGCC 1 cut(s) 242
BspHI TCATGA 1 cut(s) 255
BspQI GCTCTTC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 173, 228
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 61
Bst6I CTCTTC 4 cut(s) 76, 145, 174, 202
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 10, 86
BstMAI GTCTC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 228, 231
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 10, 86
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 255
CviAII CATG 2 cut(s) 256, 296
CviJI RGCY 8 cut(s) 19, 69, 117, 180, 207, 222, 242, 272
CviKI_1 RGCY 8 cut(s) 19, 69, 117, 180, 207, 222, 242, 272
Eam1104I CTCTTC 4 cut(s) 76, 145, 174, 202
EarI CTCTTC 4 cut(s) 76, 145, 174, 202
Eco130I CCWWGG 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 259, 299
FaiI YATR 4 cut(s) 203, 257, 275, 297
FalI AAGNNNNNCTT 5 cut(s) 25, 57, 41, 73, 292
FatI CATG 2 cut(s) 255, 295
Fnu4HI GCNGC 2 cut(s) 217, 220
FokI GGATG 2 cut(s) 17, 73
Fsp4HI GCNGC 2 cut(s) 217, 220
GluI GCNGC 2 cut(s) 217, 220
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 175
Hin1II CATG 2 cut(s) 259, 299
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 175
Hpy188III TCNNGA 4 cut(s) 61, 111, 256, 309
HpyAV CCTTC 2 cut(s) 22, 67
HpyCH4V TGCA 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 259, 299
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 2 cut(s) 103, 177
LpnPI CCDG 4 cut(s) 137, 157, 188, 256
Lsp1109I GCAGC 2 cut(s) 228, 231
MboII GAAGA 7 cut(s) 33, 36, 37, 63, 132, 161, 189
MhlI GDGCHC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 5 cut(s) 100, 174, 177, 233, 252
MroXI GAANNNNTTC 3 cut(s) 70, 118, 304
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 213
NciI CCSGG 1 cut(s) 175
NlaIII CATG 2 cut(s) 259, 299
PagI TCATGA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 76
PdmI GAANNNNTTC 3 cut(s) 70, 118, 304
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 218, 221
RseI CAYNNNNRTG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 76
SatI GCNGC 2 cut(s) 217, 220
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 164
SetI ASST 4 cut(s) 21, 71, 119, 182
SmiMI CAYNNNNRTG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 228
TaqI TCGA 1 cut(s) 23
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 1 cut(s) 139
TseI GCWGC 2 cut(s) 216, 219
TspRI CASTG 1 cut(s) 139
XagI CCTNNNNNAGG 1 cut(s) 227
XmnI GAANNNNTTC 3 cut(s) 70, 118, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.