AT5G59510

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016493
Physical Location & Seq
Forward (+)
23989755 .. 23990824
1070 bp
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UTR
Exon/CDS
Intron
AT5G59510.1

Sequence Viewer

Length: 435 bp
ATGGATGATGAAAATTTGTGGAAAGTTGTGAAGAAAGATTCCATCTTCGAAACGACTCATTTCTCTTCAAAACCTGTTTTTACACGAAGCTTCTCAACAAAAACTTCTTCTTCTTCTTCAAAACCCGTTTTCACAAGAAGTTTCTCAACTAAACCCACTTCGTATTCTTCATCAGAGCCCATCTTTAGACGGAGTTTCTCTGCAAAACCCACTTCTTCGAAATCTCCGTTTCTATCTAGAAGCGGTTCCACGAAATGCCCTGTTGATACATCTTCTACTTCCAAGTGTTCCATCTCTCGGAGCTTGTCTCAGAAAGGAGCTTCGGTGACCCGAAAGTGTCGTAATATGGCCAAGGAACACAAGTCTCGGTTTTACATCATGAAACGTTGCGTTCTGATGCTCGTTTGTTGGCACAAACATGCCTGTGATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

144

Amino Acids

16.23

Weight (kDa)

10.16

Isoelectric Point (pI)

71.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 118 - 136 2.3e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07490 AT2G29125 AT3G46613 AT5G59510
fragaria_vesca FvH4_3g04210
malus_domestica MD03G1087500.v1.1 MD11G1096600.v1.1
prunus_persica Prupe.6G072200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0065921
rosa_roxburghii Rroxscaffold_1G00015250
rosa_samantha Rh5BG450100 Rh5CG472400 Rh5DG463500
rosa_wichuraiana Rw5G040640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AclI AACGTT 1 cut(s) 385
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 2 cut(s) 69, 120
AluBI AGCT 3 cut(s) 90, 303, 320
AluI AGCT 3 cut(s) 90, 303, 320
Alw26I GTCTC 2 cut(s) 312, 369
AoxI GGCC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 2 cut(s) 48, 218
BalI TGGCCA 1 cut(s) 350
BanII GRGCYC 1 cut(s) 180
BccI CCATC 3 cut(s) 50, 188, 299
BcoDI GTCTC 2 cut(s) 312, 369
BfaI CTAG 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 292, 324
Bpu14I TTCGAA 2 cut(s) 48, 218
BsaJI CCNNGG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 323
BshFI GGCC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 312, 369
BsnI GGCC 1 cut(s) 350
Bsp119I TTCGAA 2 cut(s) 48, 218
Bsp1286I GDGCHC 1 cut(s) 180
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 247
BspT104I TTCGAA 2 cut(s) 48, 218
BssECI CCNNGG 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 70
BstBI TTCGAA 2 cut(s) 48, 218
BstDEI CTNAG 1 cut(s) 309
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 312, 369
BstNSI RCATGY 1 cut(s) 422
BstPI GGTNACC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 1 cut(s) 378
CviAII CATG 2 cut(s) 379, 419
CviJI RGCY 5 cut(s) 90, 178, 303, 320, 350
CviKI_1 RGCY 5 cut(s) 90, 178, 303, 320, 350
DdeI CTNAG 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 382, 422
FaiI YATR 3 cut(s) 347, 380, 420
FatI CATG 2 cut(s) 378, 418
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 180
FspBI CTAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 350
Hin1II CATG 2 cut(s) 382, 422
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 3 cut(s) 38, 55, 428
HphI GGTGA 1 cut(s) 337
Hpy188I TCNGA 4 cut(s) 175, 300, 312, 396
Hpy188III TCNNGA 3 cut(s) 237, 379, 432
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 2 cut(s) 382, 422
LmnI GCTCC 2 cut(s) 300, 317
LpnPI CCDG 2 cut(s) 87, 273
LweI GCATC 1 cut(s) 387
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 49
Mox20I TGGCCA 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 244
MscI TGGCCA 1 cut(s) 350
MslI CAYNNNNRTG 2 cut(s) 417, 423
Msp20I TGGCCA 1 cut(s) 350
NlaIII CATG 2 cut(s) 382, 422
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 325
NspI RCATGY 1 cut(s) 422
NspV TTCGAA 2 cut(s) 48, 218
PagI TCATGA 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 38, 428
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp1406I AACGTT 1 cut(s) 385
PspEI GGTNACC 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 417, 423
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 76, 92, 305, 322, 388
SfaNI GCATC 1 cut(s) 387
SfuI TTCGAA 2 cut(s) 48, 218
SmiMI CAYNNNNRTG 2 cut(s) 417, 423
Sse9I AATT 1 cut(s) 13
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 351
TaiI ACGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 48, 218
TasI AATT 1 cut(s) 13
TfiI GAWTC 2 cut(s) 38, 428
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 24, 159, 395
TspGWI ACGGA 2 cut(s) 205, 216
XapI RAATTY 1 cut(s) 13
XbaI TCTAGA 1 cut(s) 236
XceI RCATGY 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 244
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.