AT1G07720

3-ketoacyl-coa synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2390531 .. 2392628
2098 bp
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UTR
Exon/CDS
Intron
AT1G07720.2

Sequence Viewer

Length: 1437 bp
ATGGATCTTCTTGTTATGCTCCTCTCTCTTCTCGTCTCTTATCTCATCTTCAAGATCTGGAAACGCATAGACTCCAAGAGAGACCAAAACTGCTACATCTTGGACTACCAATGTCACAAACCTTCCGACGATCGTATGGTGAACACTCAATTCAGCGGTGATATCATCCTTCGAAACAAACACCTTCGGCTCAACGAGTACAAGTTCCTCCTCAAAGCCATCGTTAGTTCCGGTATCGGAGAGCAAACTTACGCACCAAGGCTCTTCTTTGAGGGCCGTGAACAGCGTCCTACGCTACAGGATGGGCTCTCGGAGATGGAAGAGTTTTACATAGACACCATCGAGAAAGTCCTTAAGAGAAACAAAATTTCACCTTCGGAGATTGACATCCTCGTAGTCAACGTCTCAATGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAACCATTACAAAATGAGAGAAGACATAAAAGTCTTCAACTTGACGGCGATGGGATGTAGCGCGAGTGTTATCTCCATAGATATTGTCAAAAACATCTTCAAAACATACAAGAACAAGCTTGCTCTTGTCGTGACCTCAGAGTCACTTAGTCCTAACTGGTACAGCGGAAACAACCGGTCCATGATTCTTGCCAACTGTTTGTTCCGCTCTGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGTAGTCTGAGCAGGAGAGCCATGTTCAAGCTAAGGTGTTTGGTAAGGACGCACCATGGAGCCAGAGACGATTCATTCAACGCCTGTGTCCAAAAAGAAGACGAGCTAGGACATATCGGTGTCCACTTAGACAAGACTCTTCCAAAAGCAGCGACTCGTGCTTTCATAGACAACCTCAAAGTCATCACTCCCAAGATTCTTCCGGTAACAGAGCTTTTAAGGTTTATGTTGTGTCTTCTTCTCAAGAAGCTTCGTAGCAGCCCTAGCAAAGGCTCGACGAACGTGACTCAGGCAGCTCCAAAGGCAGGGGTTAAAGCAGGGATTAACTTCAAGACCGGTATTGACCATTTCTGCATTCACACTGGAGGTAAAGCGGTTATCGACGCGATCGGTTACAGCCTCGACTTAAACGAGTACGATCTTGAACCGGCGAGGATGACGTTACACCGGTTTGGAAACACGTCAGCGAGTAGCTTGTGGTATGTTTTGGGGTATATGGAGGCAAAGAAGAGGCTGAAGAGAGGAGATAGAGTGTTCATGATCAGCTTTGGGGCAGGTTTCAAGTGCAATAGTTGCGTTTGGGAAGTTGTGAGAGATCTTAACGTTGGAGAAGCTGTAGGGAATGTGTGGAATCATTGCATTAATCAATACCCACCAAAATCGATTTTGAATCCGTTTTTCGAGAAGTATGGTTGGATTCATGAAGAAGAAGATCCTGATACTTTCAAGATGCCCGAAGGATTTATGTGA

Protein Analysis

478

Amino Acids

54.33

Weight (kDa)

9.22

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 68 - 356 1.8e-121 FAE1/Type III polyketide synthase-like protein
Chal_sti_synt_C PF02797 352 - 465 2.8e-10 Chalcone and stilbene synthases, C-terminal domain
ACP_syn_III_C PF08541 385 - 467 2.4e-13 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012947)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 476, 586
Acc36I ACCTGC 1 cut(s) 1232
AccBSI CCGCTC 1 cut(s) 654
AccII CGCG 2 cut(s) 509, 1073
AciI CCGC 4 cut(s) 156, 612, 652, 1061
AclI AACGTT 1 cut(s) 1290
AclWI GGATC 2 cut(s) 12, 1394
AcsI RAATTY 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 1223
AfaI GTAC 3 cut(s) 200, 608, 1103
AfiI CCNNNNNNNGG 2 cut(s) 956, 992
AflII CTTAAG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 1146
AgeI ACCGGT 3 cut(s) 621, 1022, 1134
AjiI CACGTC 1 cut(s) 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 9 cut(s) 565, 718, 793, 901, 937, 983, 1161, 1233, 1301
AluI AGCT 9 cut(s) 565, 718, 793, 901, 937, 983, 1161, 1233, 1301
Alw26I GTCTC 4 cut(s) 40, 75, 409, 747
AlwI GGATC 2 cut(s) 12, 1394
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 4 cut(s) 663, 836, 945, 980
ApoI RAATTY 1 cut(s) 366
AseI ATTAAT 1 cut(s) 1329
AsiGI ACCGGT 3 cut(s) 621, 1022, 1134
AspLEI GCGC 2 cut(s) 509, 668
AspS9I GGNCC 2 cut(s) 274, 624
AsuHPI GGTGA 3 cut(s) 151, 170, 363
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 1 cut(s) 843
BbsI GAAGAC 4 cut(s) 472, 474, 792, 914
BbvI GCAGC 4 cut(s) 650, 848, 957, 992
BccI CCATC 5 cut(s) 227, 296, 310, 347, 490
BceAI ACGGC 2 cut(s) 261, 507
BclI TGATCA 1 cut(s) 1227
BcoDI GTCTC 4 cut(s) 40, 75, 409, 747
BfaI CTAG 2 cut(s) 794, 951
BfmI CTRYAG 2 cut(s) 296, 1302
BfrI CTTAAG 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 1232
BglII AGATCT 2 cut(s) 54, 1282
BisI GCNGC 4 cut(s) 664, 837, 946, 981
BlsI GCNGC 4 cut(s) 665, 838, 947, 982
Bme18I GGWCC 1 cut(s) 624
BmgBI CACGTC 1 cut(s) 1149
BmgT120I GGNCC 2 cut(s) 274, 624
BmiI GGNNCC 1 cut(s) 748
BmsI GCATC 1 cut(s) 1407
BpiI GAAGAC 4 cut(s) 472, 474, 792, 914
BpmI CTGGAG 1 cut(s) 1071
Bpu10I CCTNAGC 1 cut(s) 719
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 914
Bsa29I ATCGAT 1 cut(s) 1349
BsaBI GATNNNNATC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 257, 742
BsaWI WCCGGW 5 cut(s) 230, 621, 889, 1022, 1134
BsaXI ACNNNNNCTCC 4 cut(s) 1203, 1233, 1287, 1317
Bsc4I CCNNNNNNNGG 2 cut(s) 956, 992
Bse118I RCCGGY 4 cut(s) 621, 1022, 1114, 1134
Bse1I ACTGG 2 cut(s) 608, 1054
Bse3DI GCAATG 1 cut(s) 1321
Bse8I GATNNNNATC 1 cut(s) 386
BseCI ATCGAT 1 cut(s) 1349
BseDI CCNNGG 2 cut(s) 257, 742
BseGI GGATG 5 cut(s) 165, 307, 387, 506, 1128
BseJI GATNNNNATC 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 956, 992
BseMI GCAATG 1 cut(s) 1321
BseMII CTCAG 3 cut(s) 597, 686, 989
BseNI ACTGG 2 cut(s) 608, 1054
BseRI GAGGAG 3 cut(s) 11, 200, 1224
BseXI GCAGC 4 cut(s) 650, 848, 957, 992
Bsh1236I CGCG 2 cut(s) 509, 1073
Bsh1285I CGRYCG 2 cut(s) 133, 1077
BshFI GGCC 1 cut(s) 276
BshTI ACCGGT 3 cut(s) 621, 1022, 1134
BshVI ATCGAT 1 cut(s) 1349
BsiEI CGRYCG 2 cut(s) 133, 1077
BsiSI CCGG 6 cut(s) 231, 622, 890, 1023, 1115, 1135
BslI CCNNNNNNNGG 2 cut(s) 956, 992
BsmAI GTCTC 4 cut(s) 40, 75, 409, 747
BsmBI CGTCTC 3 cut(s) 40, 409, 747
BsmI GAATGC 1 cut(s) 1041
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
Bsp19I CCATGG 1 cut(s) 742
BspACI CCGC 4 cut(s) 156, 612, 652, 1061
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 3 cut(s) 596, 687, 988
BspDI ATCGAT 1 cut(s) 1349
BspFNI CGCG 2 cut(s) 509, 1073
BspHI TCATGA 2 cut(s) 1224, 1387
BspLI GGNNCC 1 cut(s) 748
BspMI ACCTGC 1 cut(s) 1232
BspPI GGATC 2 cut(s) 12, 1394
BspQI GCTCTTC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 1321
BsrFI RCCGGY 4 cut(s) 621, 1022, 1114, 1134
BsrI ACTGG 2 cut(s) 608, 1054
BssAI RCCGGY 4 cut(s) 621, 1022, 1114, 1134
BssECI CCNNGG 2 cut(s) 257, 742
BssMI GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
BssSI CACGAG 1 cut(s) 843
BssT1I CCWWGG 2 cut(s) 257, 742
Bst2BI CACGAG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 644
Bst6I CTCTTC 6 cut(s) 33, 269, 315, 831, 1190, 1199
BstAFI CTTAAG 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 1260
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 6 cut(s) 583, 593, 695, 719, 814, 975
BstDSI CCRYGG 1 cut(s) 742
BstENI CCTNNNNNAGG 1 cut(s) 954
BstF5I GGATG 5 cut(s) 165, 307, 387, 506, 1128
BstFNI CGCG 2 cut(s) 509, 1073
BstHHI GCGC 2 cut(s) 509, 668
BstKTI GATC 8 cut(s) 7, 57, 133, 1077, 1108, 1230, 1285, 1402
BstMAI GTCTC 4 cut(s) 40, 75, 409, 747
BstMBI GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
BstMCI CGRYCG 2 cut(s) 133, 1077
BstMWI GCNNNNNNNGC 6 cut(s) 292, 660, 845, 951, 989, 1260
BstSFI CTRYAG 2 cut(s) 296, 1302
BstUI CGCG 2 cut(s) 509, 1073
BstV1I GCAGC 4 cut(s) 650, 848, 957, 992
BstV2I GAAGAC 4 cut(s) 472, 474, 792, 914
BstX2I RGATCY 4 cut(s) 4, 54, 1282, 1399
BstYI RGATCY 4 cut(s) 4, 54, 1282, 1399
Bsu15I ATCGAT 1 cut(s) 1349
BsuRI GGCC 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 1349
BtgI CCRYGG 1 cut(s) 742
BtgZI GCGATG 1 cut(s) 509
BtrI CACGTC 1 cut(s) 1149
BtsCI GGATG 5 cut(s) 165, 307, 387, 506, 1128
BtsIMutI CAGTG 1 cut(s) 1047
BveI ACCTGC 1 cut(s) 1232
Cac8I GCNNGC 1 cut(s) 567
CciI TCATGA 2 cut(s) 1224, 1387
CfoI GCGC 2 cut(s) 509, 668
Cfr10I RCCGGY 4 cut(s) 621, 1022, 1114, 1134
Cfr13I GGNCC 2 cut(s) 274, 624
ClaI ATCGAT 1 cut(s) 1349
CseI GACGC 3 cut(s) 275, 745, 1079
Csp6I GTAC 3 cut(s) 199, 607, 1102
CspAI ACCGGT 3 cut(s) 621, 1022, 1134
CviAII CATG 5 cut(s) 628, 709, 743, 1225, 1388
CviQI GTAC 3 cut(s) 199, 607, 1102
DdeI CTNAG 6 cut(s) 583, 593, 695, 719, 814, 975
DpnI GATC 8 cut(s) 6, 56, 132, 1076, 1107, 1229, 1284, 1401
DpnII GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
DrdI GACNNNNNNGTC 2 cut(s) 476, 586
DseDI GACNNNNNNGTC 2 cut(s) 476, 586
Eam1104I CTCTTC 6 cut(s) 33, 269, 315, 831, 1190, 1199
EarI CTCTTC 6 cut(s) 33, 269, 315, 831, 1190, 1199
Eco130I CCWWGG 2 cut(s) 257, 742
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 75
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 1223
EcoNI CCTNNNNNAGG 1 cut(s) 954
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 257, 742
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 2 cut(s) 257, 742
Esp3I CGTCTC 3 cut(s) 40, 409, 747
FaeI CATG 5 cut(s) 631, 712, 746, 1228, 1391
FatI CATG 5 cut(s) 627, 708, 742, 1224, 1387
FbaI TGATCA 1 cut(s) 1227
Fnu4HI GCNGC 4 cut(s) 664, 837, 946, 981
FokI GGATG 5 cut(s) 152, 314, 374, 513, 1135
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 4 cut(s) 664, 837, 946, 981
FspBI CTAG 2 cut(s) 794, 951
GlaI GCGC 2 cut(s) 508, 667
GluI GCNGC 4 cut(s) 664, 837, 946, 981
GsuI CTGGAG 1 cut(s) 1071
HaeIII GGCC 1 cut(s) 276
HapII CCGG 6 cut(s) 231, 622, 890, 1023, 1115, 1135
HgaI GACGC 3 cut(s) 275, 745, 1079
HhaI GCGC 2 cut(s) 509, 668
Hin1II CATG 5 cut(s) 631, 712, 746, 1228, 1391
Hin6I GCGC 2 cut(s) 507, 666
HinP1I GCGC 2 cut(s) 507, 666
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 2 cut(s) 563, 935
HpaII CCGG 6 cut(s) 231, 622, 890, 1023, 1115, 1135
HphI GGTGA 3 cut(s) 151, 170, 363
Hpy166II GTNNAC 4 cut(s) 142, 281, 400, 811
Hpy188I TCNGA 6 cut(s) 127, 239, 313, 379, 586, 696
Hpy8I GTNNAC 4 cut(s) 142, 281, 400, 811
Hpy99I CGWCG 3 cut(s) 131, 967, 1073
HpyAV CCTTC 6 cut(s) 132, 179, 194, 384, 435, 1418
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 5 cut(s) 402, 969, 1127, 1148, 1290
HpyCH4V TGCA 4 cut(s) 437, 1041, 1254, 1326
HpyF10VI GCNNNNNNNGC 6 cut(s) 292, 660, 845, 951, 989, 1260
HpyF3I CTNAG 6 cut(s) 583, 593, 695, 719, 814, 975
HpySE526I ACGT 5 cut(s) 402, 969, 1127, 1148, 1290
Hsp92II CATG 5 cut(s) 631, 712, 746, 1228, 1391
HspAI GCGC 2 cut(s) 507, 666
Ksp22I TGATCA 1 cut(s) 1227
Kzo9I GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 3 cut(s) 24, 746, 988
Lsp1109I GCAGC 4 cut(s) 650, 848, 957, 992
LweI GCATC 1 cut(s) 1407
MaeI CTAG 2 cut(s) 794, 951
MaeII ACGT 5 cut(s) 402, 969, 1127, 1148, 1290
MaeIII GTNAC 7 cut(s) 113, 577, 588, 892, 970, 1079, 1128
MalI GATC 8 cut(s) 6, 56, 132, 1076, 1107, 1229, 1284, 1401
MbiI CCGCTC 1 cut(s) 654
MboI GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
MflI RGATCY 4 cut(s) 4, 54, 1282, 1399
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 3 cut(s) 149, 366, 415
MlyI GAGTC 5 cut(s) 65, 596, 817, 835, 967
MmeI TCCRAC 3 cut(s) 150, 1273, 1361
MseI TTAA 8 cut(s) 354, 447, 905, 999, 1011, 1094, 1287, 1329
MslI CAYNNNNRTG 1 cut(s) 804
MspA1I CMGCKG 2 cut(s) 156, 612
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 6 cut(s) 231, 622, 890, 1023, 1115, 1135
Mva1269I GAATGC 1 cut(s) 1041
MvnI CGCG 2 cut(s) 509, 1073
MwoI GCNNNNNNNGC 6 cut(s) 292, 660, 845, 951, 989, 1260
NcoI CCATGG 1 cut(s) 742
NdeII GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
NlaIII CATG 5 cut(s) 631, 712, 746, 1228, 1391
NlaIV GGNNCC 1 cut(s) 748
NmuCI GTSAC 4 cut(s) 113, 577, 588, 970
NspV TTCGAA 1 cut(s) 172
PagI TCATGA 2 cut(s) 1224, 1387
PciSI GCTCTTC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 2 cut(s) 399, 1095
PctI GAATGC 1 cut(s) 1041
PfeI GAWTC 7 cut(s) 441, 631, 758, 883, 1318, 1357, 1384
PinAI ACCGGT 3 cut(s) 621, 1022, 1134
PkrI GCNGC 4 cut(s) 665, 838, 947, 982
Ple19I CGATCG 2 cut(s) 133, 1077
PleI GAGTC 5 cut(s) 65, 595, 817, 835, 967
PpsI GAGTC 5 cut(s) 65, 595, 817, 835, 967
PshBI ATTAAT 1 cut(s) 1329
Psp1406I AACGTT 1 cut(s) 1290
PspN4I GGNNCC 1 cut(s) 748
PspPI GGNCC 2 cut(s) 274, 624
PsuI RGATCY 4 cut(s) 4, 54, 1282, 1399
PvuI CGATCG 2 cut(s) 133, 1077
RsaI GTAC 3 cut(s) 200, 608, 1103
RsaNI GTAC 3 cut(s) 199, 607, 1102
RseI CAYNNNNRTG 1 cut(s) 804
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 8 cut(s) 354, 447, 905, 999, 1011, 1094, 1287, 1329
SatI GCNGC 4 cut(s) 664, 837, 946, 981
Sau3AI GATC 8 cut(s) 4, 54, 130, 1074, 1105, 1227, 1282, 1399
Sau96I GGNCC 2 cut(s) 274, 624
SchI GAGTC 5 cut(s) 65, 596, 817, 835, 967
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 1 cut(s) 1407
SfcI CTRYAG 2 cut(s) 296, 1302
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 804
SmlI CTYRAG 2 cut(s) 353, 929
SmoI CTYRAG 2 cut(s) 353, 929
Sse9I AATT 3 cut(s) 149, 366, 415
SsiI CCGC 4 cut(s) 156, 612, 652, 1061
SspMI CTAG 2 cut(s) 794, 951
StyI CCWWGG 2 cut(s) 257, 742
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 5 cut(s) 405, 972, 1130, 1151, 1293
TaqI TCGA 7 cut(s) 172, 342, 962, 1068, 1089, 1349, 1368
TasI AATT 3 cut(s) 149, 366, 415
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 7 cut(s) 441, 631, 758, 883, 1318, 1357, 1384
Tru1I TTAA 8 cut(s) 354, 447, 905, 999, 1011, 1094, 1287, 1329
Tru9I TTAA 8 cut(s) 354, 447, 905, 999, 1011, 1094, 1287, 1329
TscAI CASTG 1 cut(s) 1054
TseFI GTSAC 4 cut(s) 113, 577, 588, 970
TseI GCWGC 4 cut(s) 663, 836, 945, 980
Tsp45I GTSAC 4 cut(s) 113, 577, 588, 970
TspDTI ATGAA 5 cut(s) 750, 841, 1213, 1376, 1404
TspGWI ACGGA 1 cut(s) 1350
TspRI CASTG 1 cut(s) 1054
Vha464I CTTAAG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 624
VspI ATTAAT 1 cut(s) 1329
XagI CCTNNNNNAGG 1 cut(s) 954
XapI RAATTY 1 cut(s) 366
XspI CTAG 2 cut(s) 794, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.