AT2G28630

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012947
Physical Location & Seq
Reverse (-)
12274468 .. 12277417
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28630.2

Sequence Viewer

Length: 1431 bp
ATGGATCTTCTCTTTCTCTTTTTCTCTCTTCTCCTCTCTTACCTCTTTTTCAAGATCTGGAAACTCATAGACTCAAAGCAAGACAAAGATTGCTACATTTTAGACTACCAATGTCATAAACCAACCGACGATCGAATGGTGAGCACTCAATTCAGTGGAGAGATCATTTATCGAAACCAAAACCTTGGTTTAACCGAATACAAGTTCCTTCTCAAAGCCATAGTAAGCTCAGGGATTGGAGAACAAACCTACGCTCCAAGACTTGTCTTTGAAGGTCGAGAAGAGCGTCCTTCGTTACAAGATGGGATCTCCGAGATGGAAGAGTTCTACGTGGACAGCATCGGAAAACTCCTGGAGAGAAATCAAATATCTCCTAAAGACATAGACATCCTCGTAGTCAACGTCTCCATGCTCTCTTCAACGCCATCTTTAGCTTCAAGAATCATTAACCATTACAAGATGAGAGACGACGTCAAAGTCTTCAACTTGACCGGGATGGGATGCAGCGCAAGTCTAATCTCCGTAGACATTGTCAAGAACATTTTTAAGAGCTACGCAAACAAGTTAGCTCTTGTTGCCACCTCCGAGTCTTTGAGCCCTAATTGGTATAGCGGAAACAACCGTTCAATGATCTTAGCCAACTGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTAGCTTGAGAAAGAAAGCAATGTTTAAACTCAAGTGTATGGTACGGACTCACCATGGAGCTAGAGAGGAGTCTTATAATTGTTGCATCCAAGCCGAAGATGAACAAGGCCGTGTCGGGTTTTACTTGGGGAAGAATCTACCAAAAGCCGCTACTCGTGCTTTTGTAGAAAACCTCAAGGTTATAACACCCAAGATTCTTCCCGTAACCGAGCTTATAAGGTTCATGTTAAAGCTTCTTATCAAGAAAATCAAGATTCGTCAAAACCCTAGCAAGGGCTCCACGAATCTCCCACCGGGGACTCCATTAAAGGCAGGAATCAACTTCAAGACCGGGATCGAACATTTTTGCATACATACCGGAGGAAAAGCTGTGATTGATGGGATTGGACATAGCTTGGATTTAAACGAGTATGATATTGAACCTGCGAGGATGACTCTTCACCGGTTTGGCAATACTTCGGCGAGTAGTTTGTGGTATGTGTTGGCTTACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGATAGAGTTTTTATGATAAGCTTTGGAGCTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTTGTGAGAGATCTTACTGGTGGTGAATCAAAAGGAAATGTGTGGAATCATTGCATTGATGATTATCCACCAAAATCGATTCTGAATCCTTATTTGGAGAAGTTTGGCTGGATTCAAGATGAAGATCCTGACACTTTCAAGGTCCCTGACGCTTTCATGTAA

Protein Analysis

476

Amino Acids

53.97

Weight (kDa)

8.99

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 25 - 312 1.1e-118 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 341 - 423 3.4e-13 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 345 - 421 4.9e-08 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012947)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07720 AT1G07720 AT2G28630 AT2G28630
fragaria_vesca FvH4_3g34690
malus_domestica MD03G1102500.v1.1 MD11G1116500.v1.1
prunus_persica Prupe.6G086800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0062381
rosa_laevigata RLG00000035554
rosa_multiflora Rmu_sc0005798.1_g000006
rosa_roxburghii Rroxscaffold_1G00018280
rosa_rugosa Rorug05G0349200
rosa_samantha Rh5AG408700 Rh5BG423100 Rh5CG447000 Rh5DG437800
rosa_wichuraiana Rw5G038550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 765, 872, 905
AasI GACNNNNNNGTC 1 cut(s) 476
AatII GACGTC 1 cut(s) 474
Acc36I ACCTGC 1 cut(s) 1120
AccI GTMKAC 1 cut(s) 525
AciI CCGC 2 cut(s) 612, 837
AclWI GGATC 4 cut(s) 12, 314, 1031, 1388
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 1 cut(s) 732
AfiI CCNNNNNNNGG 2 cut(s) 961, 962
AgeI ACCGGT 1 cut(s) 1131
AjnI CCWGG 1 cut(s) 351
AjuI GAANNNNNNNTTGG 4 cut(s) 632, 664, 1346, 1378
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 2 cut(s) 409, 459
AlwI GGATC 4 cut(s) 12, 314, 1031, 1388
AoxI GGCC 2 cut(s) 796, 1185
ApeKI GCWGC 2 cut(s) 504, 1257
AsiGI ACCGGT 1 cut(s) 1131
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 654, 1411
AsuC2I CCSGG 3 cut(s) 493, 984, 1021
AsuHPI GGTGA 4 cut(s) 151, 731, 1121, 1304
AvaII GGWCC 2 cut(s) 654, 1411
BanII GRGCYC 2 cut(s) 599, 968
BauI CACGAG 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 516, 1244
BccI CCATC 5 cut(s) 296, 310, 433, 490, 1061
BceAI ACGGC 1 cut(s) 783
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 3 cut(s) 493, 984, 1021
BcoDI GTCTC 2 cut(s) 409, 459
BfaI CTAG 2 cut(s) 750, 957
BfuAI ACCTGC 1 cut(s) 1120
BglII AGATCT 2 cut(s) 54, 1279
BisI GCNGC 3 cut(s) 505, 837, 1258
BlsI GCNGC 3 cut(s) 506, 838, 1259
Bme1390I CCNGG 4 cut(s) 353, 493, 984, 1021
Bme18I GGWCC 2 cut(s) 654, 1411
BmgT120I GGNCC 2 cut(s) 654, 1411
BmiI GGNNCC 2 cut(s) 967, 1413
BmrFI CCNGG 4 cut(s) 353, 493, 984, 1021
BmsI GCATC 3 cut(s) 348, 491, 783
BpiI GAAGAC 1 cut(s) 472
BplI GAGNNNNNCTC 2 cut(s) 1108, 1140
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 229
BpuEI CTTGAG 3 cut(s) 704, 715, 848
BpuMI CCSGG 3 cut(s) 493, 984, 1021
Bsa29I ATCGAT 1 cut(s) 1346
BsaAI YACGTR 1 cut(s) 331
BsaBI GATNNNNATC 2 cut(s) 1332, 1392
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 3 cut(s) 184, 742, 983
BsaWI WCCGGW 4 cut(s) 651, 656, 1046, 1131
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 1200, 1230
Bsc4I CCNNNNNNNGG 2 cut(s) 961, 962
Bse118I RCCGGY 1 cut(s) 1131
Bse1I ACTGG 1 cut(s) 1291
Bse3DI GCAATG 2 cut(s) 714, 1318
Bse8I GATNNNNATC 2 cut(s) 1332, 1392
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 1346
BseDI CCNNGG 3 cut(s) 184, 742, 983
BseGI GGATG 6 cut(s) 387, 501, 506, 668, 774, 1125
BseJI GATNNNNATC 2 cut(s) 1332, 1392
BseLI CCNNNNNNNGG 2 cut(s) 961, 962
BseMI GCAATG 2 cut(s) 714, 1318
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 1291
BseRI GAGGAG 3 cut(s) 23, 770, 1221
BseXI GCAGC 2 cut(s) 516, 1244
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 798, 1187
BshTI ACCGGT 1 cut(s) 1131
BshVI ATCGAT 1 cut(s) 1346
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 7 cut(s) 492, 652, 657, 983, 1020, 1047, 1132
BslFI GGGAC 2 cut(s) 1000, 1397
BslI CCNNNNNNNGG 2 cut(s) 961, 962
BsmAI GTCTC 2 cut(s) 409, 459
BsmBI CGTCTC 2 cut(s) 409, 459
BsmFI GGGAC 2 cut(s) 1000, 1397
BsnI GGCC 2 cut(s) 798, 1187
Bsp1286I GDGCHC 3 cut(s) 146, 599, 968
Bsp143I GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
Bsp19I CCATGG 1 cut(s) 742
BspACI CCGC 2 cut(s) 612, 837
BspANI GGCC 2 cut(s) 798, 1187
BspCNI CTCAG 1 cut(s) 242
BspDI ATCGAT 1 cut(s) 1346
BspLI GGNNCC 2 cut(s) 967, 1413
BspMI ACCTGC 1 cut(s) 1120
BspPI GGATC 4 cut(s) 12, 314, 1031, 1388
BspQI GCTCTTC 1 cut(s) 276
BsrDI GCAATG 2 cut(s) 714, 1318
BsrFI RCCGGY 1 cut(s) 1131
BsrI ACTGG 1 cut(s) 1291
BssAI RCCGGY 1 cut(s) 1131
BssECI CCNNGG 3 cut(s) 184, 742, 983
BssMI GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
BssNI GRCGYC 1 cut(s) 471
BssSI CACGAG 1 cut(s) 843
BssT1I CCWWGG 2 cut(s) 184, 742
Bst2BI CACGAG 1 cut(s) 843
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 623, 644
Bst6I CTCTTC 7 cut(s) 33, 276, 315, 421, 1131, 1187, 1196
BstACI GRCGYC 1 cut(s) 471
BstBAI YACGTR 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 229, 634
BstDSI CCRYGG 1 cut(s) 742
BstF5I GGATG 6 cut(s) 387, 501, 506, 668, 774, 1125
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 9 cut(s) 7, 57, 133, 165, 309, 633, 1026, 1282, 1396
BstMAI GTCTC 2 cut(s) 409, 459
BstMBI GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 575, 845
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 4 cut(s) 351, 491, 982, 1019
BstV1I GCAGC 2 cut(s) 516, 1244
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 5 cut(s) 4, 54, 306, 1279, 1393
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 5 cut(s) 4, 54, 306, 1279, 1393
Bsu15I ATCGAT 1 cut(s) 1346
BsuRI GGCC 2 cut(s) 798, 1187
BsuTUI ATCGAT 1 cut(s) 1346
BtgI CCRYGG 1 cut(s) 742
BtsCI GGATG 6 cut(s) 387, 501, 506, 668, 774, 1125
BtsIMutI CAGTG 1 cut(s) 160
BveI ACCTGC 1 cut(s) 1120
CfoI GCGC 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 1131
Cfr13I GGNCC 2 cut(s) 654, 1411
ClaI ATCGAT 1 cut(s) 1346
CpoI CGGWCCG 1 cut(s) 654
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 731
CspAI ACCGGT 1 cut(s) 1131
CspI CGGWCCG 1 cut(s) 654
CviAII CATG 5 cut(s) 409, 743, 913, 1180, 1426
CviQI GTAC 1 cut(s) 731
DdeI CTNAG 2 cut(s) 229, 634
DpnI GATC 9 cut(s) 6, 56, 132, 164, 308, 632, 1025, 1281, 1395
DpnII GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
DraI TTTAAA 2 cut(s) 715, 1092
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 7 cut(s) 33, 276, 315, 421, 1131, 1187, 1196
EarI CTCTTC 7 cut(s) 33, 276, 315, 421, 1131, 1187, 1196
Eco130I CCWWGG 2 cut(s) 184, 742
Eco24I GRGCYC 2 cut(s) 599, 968
Eco47I GGWCC 2 cut(s) 654, 1411
EcoO109I RGGNCCY 1 cut(s) 1411
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 2 cut(s) 184, 742
EcoT38I GRGCYC 2 cut(s) 599, 968
ErhI CCWWGG 2 cut(s) 184, 742
Esp3I CGTCTC 2 cut(s) 409, 459
FaeI CATG 5 cut(s) 412, 746, 916, 1183, 1429
FaqI GGGAC 2 cut(s) 1000, 1397
FatI CATG 5 cut(s) 408, 742, 912, 1179, 1425
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 505, 837, 1258
FokI GGATG 6 cut(s) 374, 508, 513, 675, 761, 1132
FriOI GRGCYC 2 cut(s) 599, 968
Fsp4HI GCNGC 3 cut(s) 505, 837, 1258
FspBI CTAG 2 cut(s) 750, 957
GlaI GCGC 1 cut(s) 508
GluI GCNGC 3 cut(s) 505, 837, 1258
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 798, 1187
HapII CCGG 7 cut(s) 492, 652, 657, 983, 1020, 1047, 1132
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 5 cut(s) 412, 746, 916, 1183, 1429
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 2 cut(s) 920, 1228
HpaII CCGG 7 cut(s) 492, 652, 657, 983, 1020, 1047, 1132
HphI GGTGA 4 cut(s) 151, 731, 1121, 1304
Hpy166II GTNNAC 3 cut(s) 334, 400, 526
Hpy188I TCNGA 4 cut(s) 313, 344, 586, 1353
Hpy8I GTNNAC 3 cut(s) 334, 400, 526
Hpy99I CGWCG 2 cut(s) 131, 473
HpyAV CCTTC 3 cut(s) 218, 266, 300
HpyCH4III ACNGT 2 cut(s) 623, 644
HpyCH4IV ACGT 4 cut(s) 330, 402, 471, 688
HpyCH4V TGCA 4 cut(s) 504, 774, 1038, 1323
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 845
HpyF3I CTNAG 2 cut(s) 229, 634
HpySE526I ACGT 4 cut(s) 330, 402, 471, 688
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 5 cut(s) 412, 746, 916, 1183, 1429
HspAI GCGC 1 cut(s) 507
Kzo9I GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 4 cut(s) 259, 746, 971, 1235
Lsp1109I GCAGC 2 cut(s) 516, 1244
LweI GCATC 3 cut(s) 348, 491, 783
MaeI CTAG 2 cut(s) 750, 957
MaeII ACGT 4 cut(s) 330, 402, 471, 688
MaeIII GTNAC 2 cut(s) 294, 892
MalI GATC 9 cut(s) 6, 56, 132, 164, 308, 632, 1025, 1281, 1395
MboI GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
MflI RGATCY 5 cut(s) 4, 54, 306, 1279, 1393
MhlI GDGCHC 3 cut(s) 146, 599, 968
MluCI AATT 3 cut(s) 149, 601, 766
MlyI GAGTC 6 cut(s) 65, 596, 730, 767, 982, 1117
MseI TTAA 8 cut(s) 191, 447, 546, 714, 917, 995, 1091, 1245
MspI CCGG 7 cut(s) 492, 652, 657, 983, 1020, 1047, 1132
MspR9I CCNGG 4 cut(s) 353, 493, 984, 1021
MssI GTTTAAAC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 575, 845
NciI CCSGG 3 cut(s) 493, 984, 1021
NcoI CCATGG 1 cut(s) 742
NdeII GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
NlaIII CATG 5 cut(s) 412, 746, 916, 1183, 1429
NlaIV GGNNCC 2 cut(s) 967, 1413
PciSI GCTCTTC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 2 cut(s) 283, 399
PflFI GACNNNGTC 2 cut(s) 470, 530
PfoI TCCNGGA 1 cut(s) 351
PinAI ACCGGT 1 cut(s) 1131
PkrI GCNGC 3 cut(s) 506, 838, 1259
Ple19I CGATCG 1 cut(s) 133
PleI GAGTC 6 cut(s) 65, 595, 730, 766, 982, 1117
PmeI GTTTAAAC 1 cut(s) 715
PpsI GAGTC 6 cut(s) 65, 595, 730, 766, 982, 1117
Ppu21I YACGTR 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 1411
PsiI TTATAA 3 cut(s) 765, 872, 905
Psp5II RGGWCCY 1 cut(s) 1411
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 967, 1413
PspPI GGNCC 2 cut(s) 654, 1411
PspPPI RGGWCCY 1 cut(s) 1411
PsuI RGATCY 5 cut(s) 4, 54, 306, 1279, 1393
PsyI GACNNNGTC 2 cut(s) 470, 530
PvuI CGATCG 1 cut(s) 133
RsaI GTAC 1 cut(s) 732
RsaNI GTAC 1 cut(s) 731
Rsr2I CGGWCCG 1 cut(s) 654
RsrII CGGWCCG 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 8 cut(s) 191, 447, 546, 714, 917, 995, 1091, 1245
SatI GCNGC 3 cut(s) 505, 837, 1258
Sau3AI GATC 9 cut(s) 4, 54, 130, 162, 306, 630, 1023, 1279, 1393
Sau96I GGNCC 2 cut(s) 654, 1411
SchI GAGTC 6 cut(s) 65, 596, 730, 767, 982, 1117
ScrFI CCNGG 4 cut(s) 353, 493, 984, 1021
SduI GDGCHC 3 cut(s) 146, 599, 968
SfaNI GCATC 3 cut(s) 348, 491, 783
SinI GGWCC 2 cut(s) 654, 1411
SmlI CTYRAG 3 cut(s) 694, 719, 863
SmoI CTYRAG 3 cut(s) 694, 719, 863
Sse9I AATT 3 cut(s) 149, 601, 766
SsiI CCGC 2 cut(s) 612, 837
SspMI CTAG 2 cut(s) 750, 957
StyD4I CCNGG 4 cut(s) 351, 491, 982, 1019
StyI CCWWGG 2 cut(s) 184, 742
TaaI ACNGT 2 cut(s) 623, 644
TaiI ACGT 4 cut(s) 333, 405, 474, 691
TaqI TCGA 5 cut(s) 133, 172, 277, 1026, 1346
TasI AATT 3 cut(s) 149, 601, 766
TauI GCSGC 1 cut(s) 839
Tru1I TTAA 8 cut(s) 191, 447, 546, 714, 917, 995, 1091, 1245
Tru9I TTAA 8 cut(s) 191, 447, 546, 714, 917, 995, 1091, 1245
TscAI CASTG 1 cut(s) 160
TseI GCWGC 2 cut(s) 504, 1257
TspDTI ATGAA 4 cut(s) 804, 901, 1404, 1414
TspGWI ACGGA 2 cut(s) 511, 748
TspRI CASTG 1 cut(s) 160
Tth111I GACNNNGTC 2 cut(s) 470, 530
VpaK11BI GGWCC 2 cut(s) 654, 1411
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 2 cut(s) 750, 957
ZraI GACGTC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.