AT1G07795

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015900
Physical Location & Seq
Forward (+)
2414143 .. 2414967
825 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07795.1

Sequence Viewer

Length: 357 bp
ATGTATCACCGTCTTCCATCGCTAATGGAGCCGTTTCTACGGAGTGTCTCTGACCGTTGGCCGGTCATCGCTCAGGCTGCCACGTGGACGGTGCTTCTAATGTTCACGGTGGCCGTCGCTTCGTTTGCTCCGGAGATGGCTTTTGTGTCTACGGTGTCGTCTTCGTGCGGAGGAGGAGATGGTTTCGTGAAGATTCCGATGGATTTTGCAGGGGAGAGTATATGCGTGCCGTCTAATATGGTGAAGAGATCGCGTTTTGATTTGTTTGTGCCTTCGATTTTCGCGGCGGTTATGGTCACTGCTTCGGCTTGTTTGATCCGATCATGTATTGGCACGGAGAATGTGGATGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.81

Weight (kDa)

5.15

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AccII CGCG 2 cut(s) 253, 284
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 3 cut(s) 168, 284, 287
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 2 cut(s) 59, 111
AcvI CACGTG 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 310
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 2 cut(s) 59, 111
ApeKI GCWGC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 253
BbrPI CACGTG 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 5, 153
BbvI GCAGC 1 cut(s) 64
BccI CCATC 4 cut(s) 25, 130, 173, 193
BceAI ACGGC 3 cut(s) 16, 98, 214
BcoDI GTCTC 1 cut(s) 52
BisI GCNGC 2 cut(s) 78, 285
BlsI GCNGC 2 cut(s) 79, 286
BmiI GGNNCC 1 cut(s) 30
BpiI GAAGAC 2 cut(s) 5, 153
Bpu10I CCTNAGC 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 130
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 186, 189
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 2 cut(s) 253, 284
BshFI GGCC 2 cut(s) 61, 113
BsiSI CCGG 2 cut(s) 62, 131
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 52
BsnI GGCC 2 cut(s) 61, 113
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 3 cut(s) 248, 315, 320
BspACI CCGC 3 cut(s) 168, 284, 287
BspANI GGCC 2 cut(s) 61, 113
BspCNI CTCAG 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 130
BspFNI CGCG 2 cut(s) 253, 284
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 3 cut(s) 248, 315, 320
Bst4CI ACNGT 5 cut(s) 11, 56, 91, 109, 154
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 2 cut(s) 253, 284
BstKTI GATC 3 cut(s) 251, 318, 323
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 3 cut(s) 248, 315, 320
BstMWI GCNNNNNNNGC 3 cut(s) 28, 77, 125
BstUI CGCG 2 cut(s) 253, 284
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 2 cut(s) 5, 153
BsuRI GGCC 2 cut(s) 61, 113
BtgZI GCGATG 2 cut(s) 3, 52
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 61
CviAII CATG 1 cut(s) 324
CviJI RGCY 6 cut(s) 31, 61, 77, 113, 140, 308
CviKI_1 RGCY 6 cut(s) 31, 61, 77, 113, 140, 308
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 250, 317, 322
DpnII GATC 3 cut(s) 248, 315, 320
EaeI YGGCCR 2 cut(s) 59, 111
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 84
FaeI CATG 1 cut(s) 327
FaiI YATR 5 cut(s) 221, 223, 239, 293, 325
FatI CATG 1 cut(s) 323
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 2 cut(s) 78, 285
Fsp4HI GCNGC 2 cut(s) 78, 285
GluI GCNGC 2 cut(s) 78, 285
HaeIII GGCC 2 cut(s) 61, 113
HapII CCGG 2 cut(s) 62, 131
Hin1II CATG 1 cut(s) 327
HinfI GANTC 1 cut(s) 193
HpaII CCGG 2 cut(s) 62, 131
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 87, 105, 150
Hpy188I TCNGA 3 cut(s) 52, 198, 320
Hpy188III TCNNGA 2 cut(s) 131, 187
Hpy8I GTNNAC 3 cut(s) 87, 105, 150
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 5 cut(s) 11, 56, 91, 109, 154
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 77, 125
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 1 cut(s) 327
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 248, 315, 320
LmnI GCTCC 2 cut(s) 28, 133
LpnPI CCDG 4 cut(s) 59, 75, 144, 195
Lsp1109I GCAGC 1 cut(s) 64
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 295
MalI GATC 3 cut(s) 250, 317, 322
MboI GATC 3 cut(s) 248, 315, 320
MboII GAAGA 4 cut(s) 5, 153, 202, 256
MnlI CCTC 2 cut(s) 164, 167
MroI TCCGGA 1 cut(s) 130
MseI TTAA 1 cut(s) 355
MspI CCGG 2 cut(s) 62, 131
MvnI CGCG 2 cut(s) 253, 284
MwoI GCNNNNNNNGC 3 cut(s) 28, 77, 125
NdeII GATC 3 cut(s) 248, 315, 320
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 79, 286
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 84
PspCI CACGTG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 2 cut(s) 78, 285
Sau3AI GATC 3 cut(s) 248, 315, 320
SetI ASST 1 cut(s) 86
SsiI CCGC 3 cut(s) 168, 284, 287
TaaI ACNGT 5 cut(s) 11, 56, 91, 109, 154
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 275
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 295
TspGWI ACGGA 2 cut(s) 55, 350
TspRI CASTG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.