RLG00000035656

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015900
Physical Location & Seq
Forward (+)
69913573 .. 69914274
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035656

Sequence Viewer

Length: 414 bp
ATGCCTCACCTCCCATTCTTTCACTCAATCCTCCGAGCCATGGCGTCCAGGTGGCCGCTGGTTCTCTACGCGGCCACTTGGACGCTACTCCTCACGATGACCGTGGCCGTGGCGGCCTTCTCTCCCGAGATGGCTTTTGTCACGGCCATGTCTCCGTCATCGGCATTCTCCAAGTCCTGCGCGGGGGAGGGGTTTGTTAGGATACCGTTGGAGTACCCGAGAGAGGCAATGTGTTTTCCCGCCCACATGGTCCGGCGGTCCGGCTTGGATTTCTTCGTCCCCACGGTGTTTGCCGCTCTGGTCGTGACGGGTTCTGCGTTGGTCGTCAGATCGTTGGCCTTGGGGGTGGGTGGTGGAGGCTTCTGCTGCCTTCCTTTGACTGTAGCACTTCGGTGCTCACCAGGCACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.58

Weight (kDa)

9.07

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 2 cut(s) 71, 182
AciI CCGC 7 cut(s) 56, 71, 113, 182, 240, 256, 294
AcoI YGGCCR 4 cut(s) 53, 72, 105, 144
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 40, 183, 223
AjnI CCWGG 2 cut(s) 47, 400
AleI CACNNNNGTG 1 cut(s) 391
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 156
Ama87I CYCGRG 2 cut(s) 125, 217
AoxI GGCC 6 cut(s) 53, 72, 105, 114, 144, 336
ApeKI GCWGC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 250, 258
AsuHPI GGTGA 1 cut(s) 390
AvaI CYCGRG 2 cut(s) 125, 217
AvaII GGWCC 2 cut(s) 250, 258
BanI GGYRCC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 124
BceAI ACGGC 2 cut(s) 92, 159
BciT130I CCWGG 2 cut(s) 49, 402
BciVI GTATCC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 381
BfuI GTATCC 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 5 cut(s) 56, 72, 114, 294, 367
BlsI GCNGC 5 cut(s) 57, 73, 115, 295, 368
Bme1390I CCNGG 2 cut(s) 49, 402
Bme18I GGWCC 2 cut(s) 250, 258
BmeT110I CYCGRG 2 cut(s) 125, 217
BmgT120I GGNCC 2 cut(s) 250, 258
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 2 cut(s) 49, 402
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 5 cut(s) 39, 102, 108, 282, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 183, 223
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 49, 402
BseDI CCNNGG 5 cut(s) 39, 102, 108, 282, 339
BseLI CCNNNNNNNGG 3 cut(s) 40, 183, 223
BseMI GCAATG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 353
Bsh1236I CGCG 2 cut(s) 71, 182
BshFI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 398
BsiHKCI CYCGRG 2 cut(s) 125, 217
BsiSI CCGG 2 cut(s) 253, 261
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 40, 183, 223
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BsoBI CYCGRG 2 cut(s) 125, 217
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 1 cut(s) 329
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 7 cut(s) 56, 71, 113, 182, 240, 256, 294
BspANI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BspFNI CGCG 2 cut(s) 71, 182
BspLI GGNNCC 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 5 cut(s) 39, 102, 108, 282, 339
BssMI GATC 1 cut(s) 329
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 39, 339
Bst2UI CCWGG 2 cut(s) 49, 402
Bst4CI ACNGT 4 cut(s) 103, 207, 286, 382
BstACI GRCGYC 1 cut(s) 44
BstDSI CCRYGG 4 cut(s) 39, 102, 108, 282
BstFNI CGCG 2 cut(s) 71, 182
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 3 cut(s) 113, 366, 402
BstNI CCWGG 2 cut(s) 49, 402
BstSCI CCNGG 2 cut(s) 47, 400
BstSFI CTRYAG 1 cut(s) 381
BstUI CGCG 2 cut(s) 71, 182
BstV1I GCAGC 1 cut(s) 353
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BtgI CCRYGG 4 cut(s) 39, 102, 108, 282
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 250, 258
CpoI CGGWCCG 1 cut(s) 258
CseI GACGC 2 cut(s) 33, 91
Csp6I GTAC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 3 cut(s) 40, 148, 247
CviQI GTAC 1 cut(s) 214
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
EaeI YGGCCR 4 cut(s) 53, 72, 105, 144
Eco130I CCWWGG 2 cut(s) 39, 339
Eco47I GGWCC 2 cut(s) 250, 258
Eco88I CYCGRG 2 cut(s) 125, 217
EcoRII CCWGG 2 cut(s) 47, 400
EcoT14I CCWWGG 2 cut(s) 39, 339
ErhI CCWWGG 2 cut(s) 39, 339
FaeI CATG 3 cut(s) 43, 151, 250
FaiI YATR 3 cut(s) 41, 149, 248
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 39, 147, 246
FauI CCCGC 2 cut(s) 175, 247
Fnu4HI GCNGC 5 cut(s) 56, 72, 114, 294, 367
Fsp4HI GCNGC 5 cut(s) 56, 72, 114, 294, 367
GlaI GCGC 1 cut(s) 181
GluI GCNGC 5 cut(s) 56, 72, 114, 294, 367
HaeIII GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
HapII CCGG 2 cut(s) 253, 261
HgaI GACGC 2 cut(s) 33, 91
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 3 cut(s) 43, 151, 250
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HpaII CCGG 2 cut(s) 253, 261
HphI GGTGA 1 cut(s) 390
Hpy188I TCNGA 2 cut(s) 35, 329
Hpy188III TCNNGA 3 cut(s) 94, 125, 304
HpyAV CCTTC 2 cut(s) 127, 380
HpyCH4III ACNGT 4 cut(s) 103, 207, 286, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 366, 402
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 43, 151, 250
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 329
LpnPI CCDG 8 cut(s) 34, 44, 61, 190, 266, 274, 284, 387
Lsp1109I GCAGC 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 139, 304
MalI GATC 1 cut(s) 331
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 329
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 15, 20, 41, 101, 181, 217, 350
MslI CAYNNNNRTG 2 cut(s) 146, 391
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 2 cut(s) 253, 261
MspR9I CCNGG 2 cut(s) 49, 402
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 2 cut(s) 49, 402
MvnI CGCG 2 cut(s) 71, 182
MwoI GCNNNNNNNGC 3 cut(s) 113, 366, 402
NcoI CCATGG 1 cut(s) 39
NdeII GATC 1 cut(s) 329
NlaIII CATG 3 cut(s) 43, 151, 250
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 2 cut(s) 139, 304
OliI CACNNNNGTG 1 cut(s) 391
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 1 cut(s) 164
PkrI GCNGC 5 cut(s) 57, 73, 115, 295, 368
Psp6I CCWGG 2 cut(s) 47, 400
PspGI CCWGG 2 cut(s) 47, 400
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 2 cut(s) 250, 258
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 146, 391
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SatI GCNGC 5 cut(s) 56, 72, 114, 294, 367
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 2 cut(s) 250, 258
ScrFI CCNGG 2 cut(s) 49, 402
SduI GDGCHC 1 cut(s) 398
SetI ASST 3 cut(s) 12, 53, 413
SfcI CTRYAG 1 cut(s) 381
SfiI GGCCNNNNNGGCC 1 cut(s) 113
SinI GGWCC 2 cut(s) 250, 258
SmiMI CAYNNNNRTG 2 cut(s) 146, 391
SsiI CCGC 7 cut(s) 56, 71, 113, 182, 240, 256, 294
StyD4I CCNGG 2 cut(s) 47, 400
StyI CCWWGG 2 cut(s) 39, 339
TaaI ACNGT 4 cut(s) 103, 207, 286, 382
TauI GCSGC 4 cut(s) 58, 74, 116, 296
TseFI GTSAC 2 cut(s) 139, 304
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 2 cut(s) 139, 304
TspGWI ACGGA 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 250, 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.