Rh5DG446000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015900
Physical Location & Seq
Forward (+)
71231978 .. 71232343
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG446000.1

Sequence Viewer

Length: 366 bp
ATGCCTCACCTCCCATTCTTTCACTCAATCCTCCGAGCCGTGGCGTCCAGGTGGCCGCTGGTTCTCTACGCGGCCACTTGGACGCTGCTCCTCACGATGACCGTGGCCGTGGCGGCCTTCTCTCCCGAGATGGCTTTTGTCACGGCCATATCTCCGTCATCGGCATTCTCCAAGTCCTGCGCGGGGGAGGGGTTTGTTAGGATACCGTTGGAGTACCCGAGAGAGGCAATGTGTTTTCCGGCTCACATGGTCCGGCGGTCCGGCTTGGATTTCTTCGTCCCCACGGTGTTTGCCGCTCTGGTCGTGGCGGGTTCTGCGTTGGTCGTCAGATCGTTGGCCTTGGGGGTGGGTGGTGGAGGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.8

Weight (kDa)

9.38

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 2 cut(s) 71, 182
AciI CCGC 7 cut(s) 56, 71, 113, 182, 256, 294, 308
AcoI YGGCCR 4 cut(s) 53, 72, 105, 144
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 40, 183, 223
AjnI CCWGG 1 cut(s) 47
Ama87I CYCGRG 2 cut(s) 125, 217
AoxI GGCC 6 cut(s) 53, 72, 105, 114, 144, 336
ApeKI GCWGC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 250, 258
AvaI CYCGRG 2 cut(s) 125, 217
AvaII GGWCC 2 cut(s) 250, 258
BbvI GCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 124
BceAI ACGGC 3 cut(s) 23, 92, 159
BciT130I CCWGG 1 cut(s) 49
BciVI GTATCC 1 cut(s) 195
BfuI GTATCC 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 5 cut(s) 56, 72, 86, 114, 294
BlsI GCNGC 5 cut(s) 57, 73, 87, 115, 295
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 2 cut(s) 250, 258
BmeT110I CYCGRG 2 cut(s) 125, 217
BmgT120I GGNCC 2 cut(s) 250, 258
BmrFI CCNGG 1 cut(s) 49
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 5 cut(s) 39, 102, 108, 282, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 183, 223
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 5 cut(s) 39, 102, 108, 282, 339
BseLI CCNNNNNNNGG 3 cut(s) 40, 183, 223
BseMI GCAATG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 72
Bsh1236I CGCG 2 cut(s) 71, 182
BshFI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BsiHKCI CYCGRG 2 cut(s) 125, 217
BsiSI CCGG 3 cut(s) 239, 253, 261
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 40, 183, 223
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BsoBI CYCGRG 2 cut(s) 125, 217
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 7 cut(s) 56, 71, 113, 182, 256, 294, 308
BspANI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BspFNI CGCG 2 cut(s) 71, 182
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 5 cut(s) 39, 102, 108, 282, 339
BssMI GATC 1 cut(s) 329
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 103, 207, 286
BstACI GRCGYC 1 cut(s) 44
BstDSI CCRYGG 4 cut(s) 39, 102, 108, 282
BstFNI CGCG 2 cut(s) 71, 182
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 332
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 2 cut(s) 113, 314
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstUI CGCG 2 cut(s) 71, 182
BstV1I GCAGC 1 cut(s) 72
BsuI GTATCC 1 cut(s) 195
BsuRI GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
BtgI CCRYGG 4 cut(s) 39, 102, 108, 282
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 250, 258
CpoI CGGWCCG 1 cut(s) 258
CseI GACGC 2 cut(s) 33, 91
Csp6I GTAC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 1 cut(s) 247
CviQI GTAC 1 cut(s) 214
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
EaeI YGGCCR 4 cut(s) 53, 72, 105, 144
Eco130I CCWWGG 1 cut(s) 339
Eco47I GGWCC 2 cut(s) 250, 258
Eco88I CYCGRG 2 cut(s) 125, 217
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 250
FaiI YATR 2 cut(s) 149, 248
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 246
FauI CCCGC 2 cut(s) 175, 301
Fnu4HI GCNGC 5 cut(s) 56, 72, 86, 114, 294
Fsp4HI GCNGC 5 cut(s) 56, 72, 86, 114, 294
GlaI GCGC 1 cut(s) 181
GluI GCNGC 5 cut(s) 56, 72, 86, 114, 294
HaeIII GGCC 6 cut(s) 55, 74, 107, 116, 146, 338
HapII CCGG 3 cut(s) 239, 253, 261
HgaI GACGC 2 cut(s) 33, 91
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HpaII CCGG 3 cut(s) 239, 253, 261
Hpy188I TCNGA 2 cut(s) 35, 329
Hpy188III TCNNGA 2 cut(s) 94, 125
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 3 cut(s) 103, 207, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 314
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 8 cut(s) 34, 44, 61, 190, 252, 266, 274, 284
Lsp1109I GCAGC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 331
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 329
MboII GAAGA 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 15, 20, 41, 101, 181, 217, 350
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 3 cut(s) 239, 253, 261
MspR9I CCNGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 164
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 2 cut(s) 71, 182
MwoI GCNNNNNNNGC 2 cut(s) 113, 314
NdeII GATC 1 cut(s) 329
NlaIII CATG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 139
PctI GAATGC 1 cut(s) 164
PkrI GCNGC 5 cut(s) 57, 73, 87, 115, 295
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspPI GGNCC 2 cut(s) 250, 258
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SatI GCNGC 5 cut(s) 56, 72, 86, 114, 294
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 2 cut(s) 250, 258
ScrFI CCNGG 1 cut(s) 49
SetI ASST 3 cut(s) 12, 53, 361
SfiI GGCCNNNNNGGCC 1 cut(s) 113
SinI GGWCC 2 cut(s) 250, 258
SsiI CCGC 7 cut(s) 56, 71, 113, 182, 256, 294, 308
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 3 cut(s) 103, 207, 286
TauI GCSGC 4 cut(s) 58, 74, 116, 296
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 250, 258
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.