FvH4_3g35450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015900
Physical Location & Seq
Forward (+)
30503662 .. 30504591
930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35450.t1

Sequence Viewer

Length: 384 bp
ATGCCTTACCTCCCATTCTTTCACTCGATCCTCCAAGCCATGGCTTCCAGGGGGGCGCTGTTTCTCTACGCGGCCACCTGGACGCTACTCCTGACGGTGACAGTGGCCGTGGCGGCGTTCTCACCCGAGATGGCTTTCGTCACTGCCATATCTCCGTCATCGGCCTTCTCCAAGTCATGCGTGGGGGAGGGGTTTGTTAGGTTACCGATGGAGCACCCGAGAGAGGCAATGTGTTTTCCGGCTCACATGGTACGGCGGTCAGGCTTGGATTTCTTTGTCCCGACGGTGTTTGCCGCTCTGGTCGTTGCGGGTTCTGCTTTGGTCGTTAGGTCGTTGGCATTGGGAGAGAGTGGTGATGGTGAGCGAAGCAGAGAGCTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.6

Weight (kDa)

6.82

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 1 cut(s) 71
AciI CCGC 5 cut(s) 71, 113, 256, 294, 308
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 2 cut(s) 72, 105
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 40, 223
AjnI CCWGG 2 cut(s) 47, 77
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw21I GWGCWC 1 cut(s) 216
AlwI GGATC 1 cut(s) 22
Ama87I CYCGRG 2 cut(s) 125, 217
AoxI GGCC 3 cut(s) 72, 105, 162
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 4 cut(s) 109, 114, 365, 371
AvaI CYCGRG 2 cut(s) 125, 217
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 3 cut(s) 124, 202, 350
BceAI ACGGC 2 cut(s) 92, 269
BciT130I CCWGG 2 cut(s) 49, 79
BfaI CTAG 1 cut(s) 377
BfoI RGCGCY 1 cut(s) 59
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 3 cut(s) 72, 114, 294
BlsI GCNGC 3 cut(s) 73, 115, 295
Bme1390I CCNGG 2 cut(s) 49, 79
BmeT110I CYCGRG 2 cut(s) 125, 217
BmrFI CCNGG 2 cut(s) 49, 79
BsaJI CCNNGG 3 cut(s) 39, 48, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 223
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 49, 79
BseDI CCNNGG 3 cut(s) 39, 48, 108
BseLI CCNNNNNNNGG 2 cut(s) 40, 223
BseMI GCAATG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 74, 107, 164
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 2 cut(s) 125, 217
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 40, 223
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 3 cut(s) 74, 107, 164
BsoBI CYCGRG 2 cut(s) 125, 217
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 5 cut(s) 71, 113, 256, 294, 308
BspANI GGCC 3 cut(s) 74, 107, 164
BspFNI CGCG 1 cut(s) 71
BspPI GGATC 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 3 cut(s) 39, 48, 108
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 49, 79
Bst4CI ACNGT 3 cut(s) 97, 103, 286
BstDSI CCRYGG 2 cut(s) 39, 108
BstEII GGTNACC 1 cut(s) 201
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 113, 314
BstNI CCWGG 2 cut(s) 49, 79
BstPI GGTNACC 1 cut(s) 201
BstSCI CCNGG 2 cut(s) 47, 77
BstUI CGCG 1 cut(s) 71
BsuRI GGCC 3 cut(s) 74, 107, 164
BtgI CCRYGG 2 cut(s) 39, 108
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 108, 141
CfoI GCGC 1 cut(s) 58
CseI GACGC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 251
CviAII CATG 3 cut(s) 40, 177, 247
CviJI RGCY 9 cut(s) 38, 44, 74, 107, 134, 164, 242, 264, 376
CviKI_1 RGCY 9 cut(s) 38, 44, 74, 107, 134, 164, 242, 264, 376
CviQI GTAC 1 cut(s) 251
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EaeI YGGCCR 2 cut(s) 72, 105
Eco130I CCWWGG 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 125, 217
Eco91I GGTNACC 1 cut(s) 201
EcoO65I GGTNACC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 47, 77
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 3 cut(s) 43, 180, 250
FaiI YATR 4 cut(s) 41, 149, 178, 248
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 39, 176, 246
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 72, 114, 294
Fsp4HI GCNGC 3 cut(s) 72, 114, 294
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 72, 114, 294
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 3 cut(s) 74, 107, 164
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 58
Hin1II CATG 3 cut(s) 43, 180, 250
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HpaII CCGG 1 cut(s) 239
HphI GGTGA 4 cut(s) 109, 114, 365, 371
Hpy188III TCNNGA 2 cut(s) 91, 280
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 3 cut(s) 97, 103, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 314
Hsp92II CATG 3 cut(s) 43, 180, 250
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 8 cut(s) 34, 61, 64, 91, 104, 246, 252, 284
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 3 cut(s) 97, 139, 201
MalI GATC 1 cut(s) 29
MbiI CCGCTC 1 cut(s) 296
MboI GATC 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 216
MnlI CCTC 4 cut(s) 20, 41, 181, 217
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 49, 79
MvaI CCWGG 2 cut(s) 49, 79
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 113, 314
NcoI CCATGG 1 cut(s) 39
NdeII GATC 1 cut(s) 27
NlaIII CATG 3 cut(s) 43, 180, 250
NmuCI GTSAC 2 cut(s) 97, 139
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 3 cut(s) 73, 115, 295
Psp6I CCWGG 2 cut(s) 47, 77
PspEI GGTNACC 1 cut(s) 201
PspGI CCWGG 2 cut(s) 47, 77
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SatI GCNGC 3 cut(s) 72, 114, 294
Sau3AI GATC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 49, 79
SduI GDGCHC 1 cut(s) 216
SetI ASST 6 cut(s) 12, 80, 203, 332, 378, 382
SsiI CCGC 5 cut(s) 71, 113, 256, 294, 308
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 47, 77
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 97, 103, 286
TaqI TCGA 1 cut(s) 26
TauI GCSGC 3 cut(s) 74, 116, 296
TscAI CASTG 2 cut(s) 108, 148
TseFI GTSAC 2 cut(s) 97, 139
Tsp45I GTSAC 2 cut(s) 97, 139
TspGWI ACGGA 1 cut(s) 144
TspRI CASTG 2 cut(s) 108, 148
Van91I CCANNNNNTGG 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.