MD03G1097600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015900
Physical Location & Seq
Reverse (-)
8372994 .. 8374627
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1097600.v1.1.491

Sequence Viewer

Length: 384 bp
ATGTCTCTCTCGTTCTTCCACCCCATCCTCCAAGCTGCTGCGTCCAGGTGGCCGGTGTTTCTCTACATGACCACCTGGACGCTTCTTTTGTCAGTCACAGTGGCCTTGGCGTCTTTCTCTCCTGAGATTGCGTTCCTCACGGCGATATCACCCTTCTCACCCTTAGCCAAGTCTTGCACCGGAGAGGGGTTTGTTAGGTTACCCTTGGATTATCCGAGAGAGTCAATGTGCTTCCCGGCTCACATGATTCAGCGGTCTAGCTTGGATTTCTTCGTGCCGACGGTGTTTGCCGCCTTGATCGTGGCGGGGTCGGTTTTGGTCGTGCGGTCCTTGGGCTTATGGGAGGGTGAGAGACGCAGAGAGGTTGATCATGAATTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.17

Weight (kDa)

6.26

Isoelectric Point (pI)

67.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07795 AT2G28725
fragaria_vesca FvH4_3g35450
malus_domestica MD03G1097600.v1.1
prunus_persica Prupe.6G081800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0063581
rosa_laevigata RLG00000035656
rosa_multiflora Rmu_sc0035398.1_g000001 Rmu_ssc0000309.1_g000062
rosa_roxburghii Rroxscaffold_1G00017190
rosa_rugosa Rorug05G0358300
rosa_samantha Rh5BG432600 Rh5CG455800 Rh5DG446000
rosa_wichuraiana Rw5G039190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 253, 291, 305, 325
AcoI YGGCCR 1 cut(s) 50
AcyI GRCGYC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 186
AjnI CCWGG 2 cut(s) 44, 74
AluBI AGCT 2 cut(s) 35, 261
AluI AGCT 2 cut(s) 35, 261
Alw26I GTCTC 2 cut(s) 9, 346
AoxI GGCC 2 cut(s) 50, 102
ApeKI GCWGC 2 cut(s) 35, 38
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
AspS9I GGNCC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 3 cut(s) 141, 150, 359
AvaII GGWCC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 22, 25
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 46, 76
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 9, 346
BfaI CTAG 1 cut(s) 258
BisI GCNGC 3 cut(s) 36, 39, 291
BlsI GCNGC 3 cut(s) 37, 40, 292
Bme1390I CCNGG 3 cut(s) 46, 76, 236
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmrFI CCNGG 3 cut(s) 46, 76, 236
Bpu10I CCTNAGC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 3 cut(s) 105, 204, 330
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 52
BseBI CCWGG 2 cut(s) 46, 76
BseDI CCNNGG 3 cut(s) 105, 204, 330
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 22, 25
BshFI GGCC 2 cut(s) 52, 104
BsiSI CCGG 3 cut(s) 53, 180, 236
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 9, 346
BsmBI CGTCTC 1 cut(s) 346
BsnI GGCC 2 cut(s) 52, 104
Bsp143I GATC 2 cut(s) 297, 367
BspACI CCGC 4 cut(s) 253, 291, 305, 325
BspANI GGCC 2 cut(s) 52, 104
BspCNI CTCAG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 105, 204, 330
BssMI GATC 2 cut(s) 297, 367
BssNI GRCGYC 1 cut(s) 110
BssT1I CCWWGG 3 cut(s) 105, 204, 330
Bst2UI CCWGG 2 cut(s) 46, 76
Bst4CI ACNGT 2 cut(s) 100, 283
BstACI GRCGYC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 123, 163
BstEII GGTNACC 1 cut(s) 198
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 2 cut(s) 300, 370
BstMAI GTCTC 2 cut(s) 9, 346
BstMBI GATC 2 cut(s) 297, 367
BstNI CCWGG 2 cut(s) 46, 76
BstPI GGTNACC 1 cut(s) 198
BstSCI CCNGG 3 cut(s) 44, 74, 234
BstV1I GCAGC 2 cut(s) 22, 25
BsuRI GGCC 2 cut(s) 52, 104
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 105
CciI TCATGA 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 327
CseI GACGC 4 cut(s) 30, 88, 99, 363
CviAII CATG 3 cut(s) 67, 244, 371
CviJI RGCY 7 cut(s) 35, 52, 104, 167, 239, 261, 336
CviKI_1 RGCY 7 cut(s) 35, 52, 104, 167, 239, 261, 336
DdeI CTNAG 2 cut(s) 123, 163
DpnI GATC 2 cut(s) 299, 369
DpnII GATC 2 cut(s) 297, 367
EaeI YGGCCR 1 cut(s) 50
Eco130I CCWWGG 3 cut(s) 105, 204, 330
Eco32I GATATC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 327
Eco91I GGTNACC 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 44, 74
EcoRV GATATC 1 cut(s) 147
EcoT14I CCWWGG 3 cut(s) 105, 204, 330
ErhI CCWWGG 3 cut(s) 105, 204, 330
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 3 cut(s) 70, 247, 374
FaiI YATR 4 cut(s) 68, 245, 340, 372
FatI CATG 3 cut(s) 66, 243, 370
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 36, 39, 291
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 36, 39, 291
FspBI CTAG 1 cut(s) 258
GluI GCNGC 3 cut(s) 36, 39, 291
HaeIII GGCC 2 cut(s) 52, 104
HapII CCGG 3 cut(s) 53, 180, 236
HgaI GACGC 4 cut(s) 30, 88, 99, 363
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 3 cut(s) 70, 247, 374
HinfI GANTC 2 cut(s) 221, 247
HpaII CCGG 3 cut(s) 53, 180, 236
HphI GGTGA 3 cut(s) 141, 150, 359
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 122, 371
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 100, 283
HpyCH4V TGCA 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 123, 163
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 3 cut(s) 70, 247, 374
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 2 cut(s) 297, 367
LpnPI CCDG 8 cut(s) 31, 58, 61, 66, 88, 135, 193, 249
Lsp1109I GCAGC 2 cut(s) 22, 25
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 94, 198
MalI GATC 2 cut(s) 299, 369
MboI GATC 2 cut(s) 297, 367
MboII GAAGA 2 cut(s) 7, 262
MluCI AATT 1 cut(s) 374
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 5 cut(s) 38, 146, 178, 337, 355
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 3 cut(s) 53, 180, 236
MspR9I CCNGG 3 cut(s) 46, 76, 236
MvaI CCWGG 2 cut(s) 46, 76
NciI CCSGG 1 cut(s) 236
NdeII GATC 2 cut(s) 297, 367
NlaIII CATG 3 cut(s) 70, 247, 374
NmuCI GTSAC 1 cut(s) 94
PagI TCATGA 1 cut(s) 370
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 37, 40, 292
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 44, 74
PspEI GGTNACC 1 cut(s) 198
PspGI CCWGG 2 cut(s) 44, 74
PspPI GGNCC 1 cut(s) 327
SatI GCNGC 3 cut(s) 36, 39, 291
Sau3AI GATC 2 cut(s) 297, 367
Sau96I GGNCC 1 cut(s) 327
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 46, 76, 236
SetI ASST 6 cut(s) 37, 50, 77, 200, 263, 366
SinI GGWCC 1 cut(s) 327
Sse9I AATT 1 cut(s) 374
SsiI CCGC 4 cut(s) 253, 291, 305, 325
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 44, 74, 234
StyI CCWWGG 3 cut(s) 105, 204, 330
TaaI ACNGT 2 cut(s) 100, 283
TasI AATT 1 cut(s) 374
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 35, 38
Tsp45I GTSAC 1 cut(s) 94
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 327
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.